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@ToolsVanBox

Team van Boxtel @ Princess Maxima Center

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  1. PTATO PTATO Public

    PTa Analysis TOolkit

    R 13 5

  2. MutationalPatterns MutationalPatterns Public

    Forked from FreekManders/MutationalPatterns

    R package for extracting and visualizing mutational patterns in base substitution catalogues

    R 9

  3. PrimerDesign PrimerDesign Public

    Tool to design primers on a vcf file (using primer3 software)

    C 6 4

  4. SMuRF SMuRF Public

    Somatic Mutations Rechecker and Filtering

    Python 4 3

  5. NF-IAP NF-IAP Public

    Forked from UMCUGenetics/NF-IAP

    Illumina Analysis Pipeline in Nextflow

    Nextflow 2 1

  6. SNVFI SNVFI Public

    Forked from UMCUGenetics/SNVFI

    Single Nucleotide Variant Filtering

    Shell 1

Repositories

Showing 10 of 24 repositories
  • SMuRF Public

    Somatic Mutations Rechecker and Filtering

    ToolsVanBox/SMuRF’s past year of commit activity
    Python 4 MIT 3 1 1 Updated Dec 5, 2024
  • NF-IAP Public Forked from UMCUGenetics/NF-IAP

    Illumina Analysis Pipeline in Nextflow

    ToolsVanBox/NF-IAP’s past year of commit activity
    Nextflow 2 MIT 5 0 0 Updated Oct 8, 2024
  • PTATO Public

    PTa Analysis TOolkit

    ToolsVanBox/PTATO’s past year of commit activity
    R 13 MIT 5 2 0 Updated Apr 26, 2024
  • MutationalPatterns Public Forked from FreekManders/MutationalPatterns

    R package for extracting and visualizing mutational patterns in base substitution catalogues

    ToolsVanBox/MutationalPatterns’s past year of commit activity
    R 9 MIT 45 2 0 Updated Apr 5, 2024
  • NF-SMuRF Public

    Somatic Mutations Rechecker and Filtering

    ToolsVanBox/NF-SMuRF’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 15, 2024
  • PrimerDesign Public

    Tool to design primers on a vcf file (using primer3 software)

    ToolsVanBox/PrimerDesign’s past year of commit activity
    C 6 MIT 4 1 1 Updated May 22, 2023
  • Walker Public

    Link germline mutations with somatic variants

    ToolsVanBox/Walker’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 7, 2023
  • VAFchecker Public
    ToolsVanBox/VAFchecker’s past year of commit activity
    Python 0 0 0 1 Updated Dec 26, 2022
  • ELAN_tools Public Forked from UMCUGenetics/ELAN_tools

    Utility scripts for elabjournal

    ToolsVanBox/ELAN_tools’s past year of commit activity
    Python 1 1 0 0 Updated Aug 10, 2022
  • Genotoxin_assay Public Forked from AxelRosendahlHuber/Genotoxin_assay

    Data and code accompanying the research protocol: "Assessing the mutagenic impact of genotoxins in human umbilical cord-blood derived stem cells"

    ToolsVanBox/Genotoxin_assay’s past year of commit activity
    R 0 1 0 0 Updated Apr 8, 2022
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