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  1. singlecelldb singlecelldb Public

    An actionable database of publicly available single-cell RNA-seq data

    Jupyter Notebook 41 9

  2. GeneSetCluster GeneSetCluster Public

    a tool for summarizing and integrating gene-set analysis results

    HTML 16 4

  3. scbert-reusability scbert-reusability Public

    Reusability report of scBERT

    Python 13 3

  4. TransformersInGenomicsPapers TransformersInGenomicsPapers Public

    A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that …

    Python 10 1

  5. LIBRA LIBRA Public

    Machine Translation between paired Single Cell Multi Omics Data

    HTML 6 4

  6. RNASEQ-Pair-end-Pipeline RNASEQ-Pair-end-Pipeline Public

    Description of the different step in Pipeline RNAseq Pair End. From fastq to count tables. Then normalize and obtain the genes highly differentiated.

    R 3

Repositories

Showing 10 of 34 repositories
  • TransformersInGenomicsPapers Public

    A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that demonstrate the application of transformer-based models in genomics, providing users with a valuable resource to navigate this rapidly evolving field.

    TranslationalBioinformaticsUnit/TransformersInGenomicsPapers’s past year of commit activity
    Python 10 1 0 0 Updated Dec 18, 2024
  • bcell Public

    Gene Regulatory Network of early B cell differentiation in Humans

    TranslationalBioinformaticsUnit/bcell’s past year of commit activity
    R 0 0 0 0 Updated Nov 22, 2024
  • Benchmarking-SegmentationMethods-ST Public
    TranslationalBioinformaticsUnit/Benchmarking-SegmentationMethods-ST’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 29, 2024
  • LLM_assistant_mini-review Public
    TranslationalBioinformaticsUnit/LLM_assistant_mini-review’s past year of commit activity
    R 0 0 0 0 Updated Oct 16, 2024
  • ClustAll Public
    TranslationalBioinformaticsUnit/ClustAll’s past year of commit activity
    R 1 0 0 0 Updated Oct 16, 2024
  • GeneSetCluster Public

    a tool for summarizing and integrating gene-set analysis results

    TranslationalBioinformaticsUnit/GeneSetCluster’s past year of commit activity
    HTML 16 GPL-3.0 4 0 2 Updated Aug 14, 2024
  • scbert-reusability Public

    Reusability report of scBERT

    TranslationalBioinformaticsUnit/scbert-reusability’s past year of commit activity
    Python 13 GPL-3.0 3 0 0 Updated Jul 14, 2024
  • GeneSetCluster2.0 Public

    GeneSetCluster 2.0: a comprehensive toolset for summarizing and integrating gene-sets analysis

    TranslationalBioinformaticsUnit/GeneSetCluster2.0’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Jun 18, 2024
  • A-Primer-on-Transformers-in-Single-Cell-Genomics Public
    TranslationalBioinformaticsUnit/A-Primer-on-Transformers-in-Single-Cell-Genomics’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Jun 14, 2024
  • DockerSeminar Public
    TranslationalBioinformaticsUnit/DockerSeminar’s past year of commit activity
    R 0 0 0 0 Updated Feb 12, 2024
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