Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[Merged by Bors] - Linearization/flattening of SimpleVarInfo #417

Closed
wants to merge 245 commits into from
Closed

[Merged by Bors] - Linearization/flattening of SimpleVarInfo #417

wants to merge 245 commits into from

Commits on Jan 7, 2022

  1. performing linking in assume rather than implicitly in getindex

    @torfjelde
    torfjelde committed Jan 7, 2022
    Configuration menu
    Copy the full SHA
    14594d6 View commit details
    Browse the repository at this point in the history

  2. added istrans to SimpleVarInfo

    @torfjelde
    torfjelde committed Jan 7, 2022
    Configuration menu
    Copy the full SHA
    0bc279f View commit details
    Browse the repository at this point in the history

  3. Apply suggestions from code review 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Jan 7, 2022
    Configuration menu
    Copy the full SHA
    81ee12e View commit details
    Browse the repository at this point in the history

  4. added a comment

    @torfjelde
    torfjelde committed Jan 7, 2022
    Configuration menu
    Copy the full SHA
    d39f87d View commit details
    Browse the repository at this point in the history

  5. bump patch version

    @torfjelde
    torfjelde committed Jan 7, 2022
    Configuration menu
    Copy the full SHA
    23f34cc View commit details
    Browse the repository at this point in the history

Commits on Jan 9, 2022

  1. introduced settrans!!

    @torfjelde
    torfjelde committed Jan 9, 2022
    Configuration menu
    Copy the full SHA
    d3ec108 View commit details
    Browse the repository at this point in the history

  2. added istrans(vi) and renamed all occurences of trans! to trans!!

    @torfjelde
    torfjelde committed Jan 9, 2022
    Configuration menu
    Copy the full SHA
    81782c9 View commit details
    Browse the repository at this point in the history

Commits on Jan 10, 2022

  1. exclusively use settrans!! to set the istrans for SimpleVarInfo

    @torfjelde
    torfjelde committed Jan 10, 2022
    Configuration menu
    Copy the full SHA
    12bfb42 View commit details
    Browse the repository at this point in the history

  2. removed usage of deprecated method in turing tests

    @torfjelde
    torfjelde committed Jan 10, 2022
    Configuration menu
    Copy the full SHA
    c2c2417 View commit details
    Browse the repository at this point in the history

Commits on Jan 13, 2022

  1. added docstring to settrans!!

    @torfjelde
    torfjelde committed Jan 13, 2022
    Configuration menu
    Copy the full SHA
    2e2cb5c View commit details
    Browse the repository at this point in the history

Commits on Jan 27, 2022

  1. include istrans flag in type of SimpleVarInfo instead

    @torfjelde
    torfjelde committed Jan 27, 2022
    Configuration menu
    Copy the full SHA
    f6c3fc4 View commit details
    Browse the repository at this point in the history

  2. deprecated settrans! in favour of settrans!!

    @torfjelde
    torfjelde committed Jan 27, 2022
    Configuration menu
    Copy the full SHA
    d643a78 View commit details
    Browse the repository at this point in the history

  3. added some tests specifically for istrans

    @torfjelde
    torfjelde committed Jan 27, 2022
    Configuration menu
    Copy the full SHA
    3cab7d9 View commit details
    Browse the repository at this point in the history

  4. formatting

    @torfjelde
    torfjelde committed Jan 27, 2022
    Configuration menu
    Copy the full SHA
    8b870dc View commit details
    Browse the repository at this point in the history

  5. fixed bugs for ThreadSafeVarInfo

    @torfjelde
    torfjelde committed Jan 27, 2022
    Configuration menu
    Copy the full SHA
    0b304db View commit details
    Browse the repository at this point in the history

  6. additional constructor for SimpleVarInfo

    @torfjelde
    torfjelde committed Jan 27, 2022
    Configuration menu
    Copy the full SHA
    b146b11 View commit details
    Browse the repository at this point in the history

Commits on Feb 9, 2022

  1. Update src/DynamicPPL.jl 

    Co-authored-by: David Widmann <[email protected]>
    @torfjelde @devmotion
    torfjelde and devmotion authored Feb 9, 2022
    Configuration menu
    Copy the full SHA
    d170d92 View commit details
    Browse the repository at this point in the history

  2. added ConstructionBase.jl as dep

    @torfjelde
    torfjelde committed Feb 9, 2022
    Configuration menu
    Copy the full SHA
    f46183b View commit details
    Browse the repository at this point in the history

  3. added constraint types and doctests

    @torfjelde
    torfjelde committed Feb 9, 2022
    Configuration menu
    Copy the full SHA
    7a78eec View commit details
    Browse the repository at this point in the history

  4. added DocStringExtensions as a dep

    @torfjelde
    torfjelde committed Feb 9, 2022
    Configuration menu
    Copy the full SHA
    70b3b70 View commit details
    Browse the repository at this point in the history

  5. formatting

    @torfjelde
    torfjelde committed Feb 9, 2022
    Configuration menu
    Copy the full SHA
    a03e8cf View commit details
    Browse the repository at this point in the history

  6. remove redundant maybe_link

    @torfjelde
    torfjelde committed Feb 9, 2022
    Configuration menu
    Copy the full SHA
    793c931 View commit details
    Browse the repository at this point in the history

  7. fixed typo

    @torfjelde
    torfjelde committed Feb 9, 2022
    Configuration menu
    Copy the full SHA
    a9b12fd View commit details
    Browse the repository at this point in the history

  8. Merge branch 'master' into tor/link-improvements

    @yebai
    yebai authored Feb 9, 2022
    Configuration menu
    Copy the full SHA
    b1d7f9a View commit details
    Browse the repository at this point in the history

Commits on Feb 11, 2022

  1. moved a docstring

    @torfjelde
    torfjelde committed Feb 11, 2022
    Configuration menu
    Copy the full SHA
    be98961 View commit details
    Browse the repository at this point in the history

  2. fixed bug in tets

    @torfjelde
    torfjelde committed Feb 11, 2022
    Configuration menu
    Copy the full SHA
    3e1588b View commit details
    Browse the repository at this point in the history

  3. Merge branch 'tor/link-improvements' of github.com:TuringLang/Dynamic… 

    …PPL.jl into tor/link-improvements
    @torfjelde
    torfjelde committed Feb 11, 2022
    Configuration menu
    Copy the full SHA
    7697fce View commit details
    Browse the repository at this point in the history

  4. version bump

    @torfjelde
    torfjelde committed Feb 11, 2022
    Configuration menu
    Copy the full SHA
    3139c62 View commit details
    Browse the repository at this point in the history

Commits on Feb 12, 2022

  1. added missing istrans impl

    @torfjelde
    torfjelde committed Feb 12, 2022
    Configuration menu
    Copy the full SHA
    3610658 View commit details
    Browse the repository at this point in the history

Commits on Feb 13, 2022

  1. fixed bug with istrans

    @torfjelde
    torfjelde committed Feb 13, 2022
    Configuration menu
    Copy the full SHA
    27171ad View commit details
    Browse the repository at this point in the history

  2. fixed issue with getindex_raw for VarInfo

    @torfjelde
    torfjelde committed Feb 13, 2022
    Configuration menu
    Copy the full SHA
    cd2d9d6 View commit details
    Browse the repository at this point in the history

  3. Update src/varinfo.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Feb 13, 2022
    Configuration menu
    Copy the full SHA
    d948cb9 View commit details
    Browse the repository at this point in the history

Commits on Jun 10, 2022

  1. Merge branch 'master' into tor/link-improvements

    @torfjelde
    torfjelde committed Jun 10, 2022
    Configuration menu
    Copy the full SHA
    6a3e18f View commit details
    Browse the repository at this point in the history

Commits on Jun 17, 2022

  1. Merge branch 'master' into tor/link-improvements

    @torfjelde
    torfjelde committed Jun 17, 2022
    Configuration menu
    Copy the full SHA
    d674478 View commit details
    Browse the repository at this point in the history

Commits on Jun 22, 2022

  1. getindex of varinfo implementations now optionally takes a Distributi… 

    …on argument
    @torfjelde
    torfjelde committed Jun 22, 2022
    Configuration menu
    Copy the full SHA
    26d2dbb View commit details
    Browse the repository at this point in the history

  2. use get_index_raw with dist argument

    @torfjelde
    torfjelde committed Jun 22, 2022
    Configuration menu
    Copy the full SHA
    3fcba56 View commit details
    Browse the repository at this point in the history

  3. added missing assume implementations for SimpleVarInfo

    @torfjelde
    torfjelde committed Jun 22, 2022
    Configuration menu
    Copy the full SHA
    83a9448 View commit details
    Browse the repository at this point in the history

  4. fixed settrans!! for VarInfo

    @torfjelde
    torfjelde committed Jun 22, 2022
    Configuration menu
    Copy the full SHA
    356fa9c View commit details
    Browse the repository at this point in the history

Commits on Jun 24, 2022

  1. formatting

    @torfjelde
    torfjelde committed Jun 24, 2022
    Configuration menu
    Copy the full SHA
    13f037f View commit details
    Browse the repository at this point in the history

  2. fixed bug where constrained/unconstrained wasn't preserved in setinde… 

    …x!! for SimpleVarInfo
    @torfjelde
    torfjelde committed Jun 24, 2022
    Configuration menu
    Copy the full SHA
    c7544e0 View commit details
    Browse the repository at this point in the history

  3. hack to avoid type-instabilities for dot_assume with MultivariateDist… 

    …ribution
    @torfjelde
    torfjelde committed Jun 24, 2022
    Configuration menu
    Copy the full SHA
    d1dccf1 View commit details
    Browse the repository at this point in the history

Commits on Jun 26, 2022

  1. style

    @torfjelde
    torfjelde committed Jun 26, 2022
    Configuration menu
    Copy the full SHA
    ff7ff4a View commit details
    Browse the repository at this point in the history

  2. added keys implementations for the models in TestUtils to make testin… 

    …g AbstractVarInfo

implementations easier
    @torfjelde
    torfjelde committed Jun 26, 2022
    Configuration menu
    Copy the full SHA
    2f1a2ff View commit details
    Browse the repository at this point in the history

  3. added additional test model which uses dot-assume on MultivariateDist… 

    …ribution
    @torfjelde
    torfjelde committed Jun 26, 2022
    Configuration menu
    Copy the full SHA
    d6311b7 View commit details
    Browse the repository at this point in the history

  4. updated tests for SimpleVarInfo

    @torfjelde
    torfjelde committed Jun 26, 2022
    Configuration menu
    Copy the full SHA
    ed2fa69 View commit details
    Browse the repository at this point in the history

  5. added a no-op reconstruct for UnivariateDistribution

    @torfjelde
    torfjelde committed Jun 26, 2022
    Configuration menu
    Copy the full SHA
    a82be56 View commit details
    Browse the repository at this point in the history

Commits on Jun 27, 2022

  1. fixed tests for loglikelihoods

    @torfjelde
    torfjelde committed Jun 27, 2022
    Configuration menu
    Copy the full SHA
    7aacee5 View commit details
    Browse the repository at this point in the history

  2. fixed dot_tilde_assume for LikelihoodContext

    @torfjelde
    torfjelde committed Jun 27, 2022
    Configuration menu
    Copy the full SHA
    96f128f View commit details
    Browse the repository at this point in the history

  3. removed some now redundant explicit calls to maybe_invlink

    @torfjelde
    torfjelde committed Jun 27, 2022
    Configuration menu
    Copy the full SHA
    2e88d08 View commit details
    Browse the repository at this point in the history

  4. added impls of size and length for the wrapper distributions so they … 

    …work for reconstruct
    @torfjelde
    torfjelde committed Jun 27, 2022
    Configuration menu
    Copy the full SHA
    0f9765b View commit details
    Browse the repository at this point in the history

Commits on Jun 28, 2022

  1. bumped version

    @torfjelde
    torfjelde committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    116c95c View commit details
    Browse the repository at this point in the history

  2. removed redunant explict call to maybe_invlink

    @torfjelde
    torfjelde committed Jun 28, 2022
    Configuration menu
    Copy the full SHA
    d797e99 View commit details
    Browse the repository at this point in the history

Commits on Jun 29, 2022

  1. added test model with array on RHS of a .~ statement

    @torfjelde
    torfjelde committed Jun 29, 2022
    Configuration menu
    Copy the full SHA
    44b2f66 View commit details
    Browse the repository at this point in the history

  2. improved some of the default implementations of dot_assume

    @torfjelde
    torfjelde committed Jun 29, 2022
    Configuration menu
    Copy the full SHA
    81cd881 View commit details
    Browse the repository at this point in the history

  3. removed unnecessary code in tests

    @torfjelde
    torfjelde committed Jun 29, 2022
    Configuration menu
    Copy the full SHA
    2e14abd View commit details
    Browse the repository at this point in the history

  4. improved linking usage in assumes for SimpleVarInfo

    @torfjelde
    torfjelde committed Jun 29, 2022
    Configuration menu
    Copy the full SHA
    12adc83 View commit details
    Browse the repository at this point in the history

  5. Merge branch 'master' into tor/link-improvements

    @yebai
    yebai authored Jun 29, 2022
    Configuration menu
    Copy the full SHA
    af3e6ba View commit details
    Browse the repository at this point in the history

Commits on Jun 30, 2022

  1. added model for testing dynamic constraints

    @torfjelde
    torfjelde committed Jun 30, 2022
    Configuration menu
    Copy the full SHA
    f7501df View commit details
    Browse the repository at this point in the history

  2. added logjoint_true_with_logabsdet_jacobian to TestUtils

    @torfjelde
    torfjelde committed Jun 30, 2022
    Configuration menu
    Copy the full SHA
    abcabf4 View commit details
    Browse the repository at this point in the history

  3. added test for dynamic constraints for SimpleVarInfo

    @torfjelde
    torfjelde committed Jun 30, 2022
    Configuration menu
    Copy the full SHA
    fdee509 View commit details
    Browse the repository at this point in the history

  4. fixed keys implementation of SimpleVarInfo

    @torfjelde
    torfjelde committed Jun 30, 2022
    Configuration menu
    Copy the full SHA
    e974c83 View commit details
    Browse the repository at this point in the history

  5. reverted unintended change

    @torfjelde
    torfjelde committed Jun 30, 2022
    Configuration menu
    Copy the full SHA
    6c6d5f5 View commit details
    Browse the repository at this point in the history

  6. added example_values and posterior_mean_values methods to models in T… 

    …estUtils
    @torfjelde
    torfjelde committed Jun 30, 2022
    Configuration menu
    Copy the full SHA
    5d5bc88 View commit details
    Browse the repository at this point in the history

  7. demo models in TestUtils are now a bit more complex, including constr… 

    …ained variables
    @torfjelde
    torfjelde committed Jun 30, 2022
    Configuration menu
    Copy the full SHA
    0498336 View commit details
    Browse the repository at this point in the history

Commits on Jul 1, 2022

  1. added logprior_true_with_logabsdet_jacobian for demo models

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    f86f264 View commit details
    Browse the repository at this point in the history

  2. fixed mistakes in a couple of models in TestUtils

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    0d31137 View commit details
    Browse the repository at this point in the history

  3. moved varnames method which creates iterator of leaf varnames into Te… 

    …stUtils and starting using this

in test_continuous_models
    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    c52630b View commit details
    Browse the repository at this point in the history

  4. updated docstring for test_sampler_demo_models

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    fff060c View commit details
    Browse the repository at this point in the history

  5. renamed varnames to varname_leaves and renamed keys(model) to varname… 

    …s(model)
    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    e21958c View commit details
    Browse the repository at this point in the history

  6. added test_sampler_on_models as a generalization of test_sampler_demo… 

    …_models
    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    9669345 View commit details
    Browse the repository at this point in the history

  7. updated docs

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    7e02735 View commit details
    Browse the repository at this point in the history

  8. added docs for TestUtils.DEMO_MODELS

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    a412029 View commit details
    Browse the repository at this point in the history

  9. updated some tests

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    f3818c3 View commit details
    Browse the repository at this point in the history

  10. fixed docstrings

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    8b799a4 View commit details
    Browse the repository at this point in the history

  11. fixed docstrings

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    93cb298 View commit details
    Browse the repository at this point in the history

  12. imprvoed docstring

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    ba5852b View commit details
    Browse the repository at this point in the history

  13. improved docstrings

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    328f713 View commit details
    Browse the repository at this point in the history

  14. renamed Base.keys(model) to varnames(model) in TestUtils

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    801bd4c View commit details
    Browse the repository at this point in the history

  15. added default implementation and docstring for TestUtils.varnames

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    46f6f4c View commit details
    Browse the repository at this point in the history

  16. replace handwritten by DocStringExtensions

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    bcb767b View commit details
    Browse the repository at this point in the history

  17. Apply suggestions from @devmotion 

    Co-authored-by: David Widmann <[email protected]>
    @torfjelde @devmotion
    torfjelde and devmotion authored Jul 1, 2022
    Configuration menu
    Copy the full SHA
    c5be1c2 View commit details
    Browse the repository at this point in the history

  18. Update src/context_implementations.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Jul 1, 2022
    Configuration menu
    Copy the full SHA
    f266929 View commit details
    Browse the repository at this point in the history

  19. removed some asserts and use broadcast instead of map

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    c2dbbaf View commit details
    Browse the repository at this point in the history

  20. replace map with broadcasting to ensure consistent behavior

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    1abb46c View commit details
    Browse the repository at this point in the history

  21. Update src/simple_varinfo.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Jul 1, 2022
    Configuration menu
    Copy the full SHA
    1086c6c View commit details
    Browse the repository at this point in the history

  22. added a method nodist to allow broadcasting NoDist constructor

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    f2fb4a5 View commit details
    Browse the repository at this point in the history

  23. updated some tests

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    490d24e View commit details
    Browse the repository at this point in the history

  24. renamed AbstractConstraint to AbstractTransformation and its subtypes

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    6350ccd View commit details
    Browse the repository at this point in the history

  25. updated tests

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    951e4c3 View commit details
    Browse the repository at this point in the history

  26. fixed nodist usage

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    dcd92c9 View commit details
    Browse the repository at this point in the history

  27. fixed implementation of nodist

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    2922ffa View commit details
    Browse the repository at this point in the history

  28. fixed typo

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    5266a4b View commit details
    Browse the repository at this point in the history

  29. formatting

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    3c38710 View commit details
    Browse the repository at this point in the history

  30. bump patch version

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    ba92f3f View commit details
    Browse the repository at this point in the history

  31. fixed ThreadsafeVarInfo

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    70c864c View commit details
    Browse the repository at this point in the history

  32. Merge branch 'tor/link-improvements' into tor/test-utils-improvements

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    8b6b440 View commit details
    Browse the repository at this point in the history

  33. fixed tests of pointwise_loglikelihoods

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    5843699 View commit details
    Browse the repository at this point in the history

  34. Apply suggestions from code review 

    Co-authored-by: David Widmann <[email protected]>
    @torfjelde @devmotion
    torfjelde and devmotion authored Jul 1, 2022
    Configuration menu
    Copy the full SHA
    66f41a9 View commit details
    Browse the repository at this point in the history

  35. allow type-stable settrans!! for SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    eb2d6b5 View commit details
    Browse the repository at this point in the history

  36. use maybe_invlink in getindex for VarInfo

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    e8cdb91 View commit details
    Browse the repository at this point in the history

  37. added comment to warn about buggy behavior

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    359d384 View commit details
    Browse the repository at this point in the history

  38. Merge branch 'tor/link-improvements' into tor/test-utils-improvements

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    0b20f09 View commit details
    Browse the repository at this point in the history

  39. Update src/context_implementations.jl 

    Co-authored-by: David Widmann <[email protected]>
    @torfjelde @devmotion
    torfjelde and devmotion authored Jul 1, 2022
    Configuration menu
    Copy the full SHA
    ab0a99b View commit details
    Browse the repository at this point in the history

  40. just fix potential bug in getindex for VarInfo

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    dd10913 View commit details
    Browse the repository at this point in the history

  41. revert previous change because it likely introduces bugs

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    18d28cc View commit details
    Browse the repository at this point in the history

  42. elaborate in comment regarding potential bug

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    32b7aab View commit details
    Browse the repository at this point in the history

  43. Merge branch 'tor/link-improvements' of github.com:TuringLang/Dynamic… 

    …PPL.jl into tor/link-improvements
    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    fb86231 View commit details
    Browse the repository at this point in the history

  44. added error message to dot_assume

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    f782fe2 View commit details
    Browse the repository at this point in the history

  45. added error message to dot_assume again

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    7d3493d View commit details
    Browse the repository at this point in the history

  46. Merge branch 'tor/link-improvements' into tor/test-utils-improvements

    @torfjelde
    torfjelde committed Jul 1, 2022
    Configuration menu
    Copy the full SHA
    2b1893c View commit details
    Browse the repository at this point in the history

Commits on Jul 2, 2022

  1. Apply suggestions from code review 

    Co-authored-by: David Widmann <[email protected]>
    @torfjelde @devmotion
    torfjelde and devmotion authored Jul 2, 2022
    Configuration menu
    Copy the full SHA
    912d7f8 View commit details
    Browse the repository at this point in the history

  2. renamed posterior_mean_values to posterior_mean

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    a276e4a View commit details
    Browse the repository at this point in the history

  3. made demo models a bit more complex, now including different observat… 

    …ions
    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    626eea2 View commit details
    Browse the repository at this point in the history

  4. Update docs/src/api.md 

    Co-authored-by: David Widmann <[email protected]>
    @torfjelde @devmotion
    torfjelde and devmotion authored Jul 2, 2022
    Configuration menu
    Copy the full SHA
    1558924 View commit details
    Browse the repository at this point in the history

  5. reduce number of method definitions by defining some useful type unio… 

    …ns in TestUtils
    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    a62c881 View commit details
    Browse the repository at this point in the history

  6. removed unnecessary method

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    5cc195a View commit details
    Browse the repository at this point in the history

  7. Merge branch 'tor/test-utils-improvements' of github.com:TuringLang/D… 

    …ynamicPPL.jl into tor/test-utils-improvements
    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    ea5a7a4 View commit details
    Browse the repository at this point in the history

  8. fixed a couple of loglikelihood_true definitions

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    702f2ff View commit details
    Browse the repository at this point in the history

  9. style

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    d8f4970 View commit details
    Browse the repository at this point in the history

  10. added tests for logprior and loglikelihood computation for SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    56f30bc View commit details
    Browse the repository at this point in the history

  11. fixed implementation of logpdf_with_trans for NoDist

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    2eaef02 View commit details
    Browse the repository at this point in the history

  12. added _protect_dists method to help with broadcasting of NoDist

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    f0f981b View commit details
    Browse the repository at this point in the history

  13. Merge branch 'tor/link-improvements' into tor/test-utils-improvements

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    8063d1e View commit details
    Browse the repository at this point in the history

  14. simplified show for SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    1e0b946 View commit details
    Browse the repository at this point in the history

  15. styling

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    faa0e42 View commit details
    Browse the repository at this point in the history

  16. Merge branch 'tor/link-improvements' into tor/test-utils-improvements

    @torfjelde
    torfjelde committed Jul 2, 2022
    Configuration menu
    Copy the full SHA
    2935bde View commit details
    Browse the repository at this point in the history

Commits on Jul 3, 2022

  1. removed unused variable

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    78f22e1 View commit details
    Browse the repository at this point in the history

  2. added test for transformed values for the logprior_true and loglikeli… 

    …hood_true methods
    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    025a4d4 View commit details
    Browse the repository at this point in the history

  3. fixed bug in show for SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    9e7f493 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'tor/link-improvements' into tor/test-utils-improvements

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    a72e9b8 View commit details
    Browse the repository at this point in the history

  5. Revert "added _protect_dists method to help with broadcasting of NoDist" 

    This reverts commit f0f981b.
    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    0a9383b View commit details
    Browse the repository at this point in the history

  6. Merge branch 'tor/link-improvements' into tor/test-utils-improvements

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    c057080 View commit details
    Browse the repository at this point in the history

  7. renamed test_sampler_on_models to test_sampler

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    f5c60ae View commit details
    Browse the repository at this point in the history

  8. fixed getindex with vector of varnames for AbstractVarInfo

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    d8b0a75 View commit details
    Browse the repository at this point in the history

  9. Merge branch 'tor/link-improvements' into tor/test-utils-improvements

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    7149c02 View commit details
    Browse the repository at this point in the history

  10. updated docs

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    25f05de View commit details
    Browse the repository at this point in the history

  11. share implementation of example_values

    @torfjelde
    torfjelde committed Jul 3, 2022
    Configuration menu
    Copy the full SHA
    e05fa29 View commit details
    Browse the repository at this point in the history

Commits on Jul 4, 2022

  1. Apply suggestions from code review 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Jul 4, 2022
    Configuration menu
    Copy the full SHA
    431664d View commit details
    Browse the repository at this point in the history

Commits on Jul 6, 2022

  1. added unflatten and values_as for Vector

    @torfjelde
    torfjelde committed Jul 6, 2022
    Configuration menu
    Copy the full SHA
    363ebae View commit details
    Browse the repository at this point in the history

  2. added getindex for AbstractVarInfo with Colon

    @torfjelde
    torfjelde committed Jul 6, 2022
    Configuration menu
    Copy the full SHA
    66424f8 View commit details
    Browse the repository at this point in the history

Commits on Jul 7, 2022

  1. added unflatten to VarInfo

    @torfjelde
    torfjelde committed Jul 7, 2022
    Configuration menu
    Copy the full SHA
    3bc27f8 View commit details
    Browse the repository at this point in the history

  2. added make_default_varinfo allowing specification of how to initialize 

    AbstractVarInfo used by a Sampler
    @torfjelde
    torfjelde committed Jul 7, 2022
    Configuration menu
    Copy the full SHA
    ca5b080 View commit details
    Browse the repository at this point in the history

Commits on Jul 10, 2022

  1. added unflatten also taking sampler for SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 10, 2022
    Configuration menu
    Copy the full SHA
    cb05fc9 View commit details
    Browse the repository at this point in the history

  2. added tonamedtuple impl for SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 10, 2022
    Configuration menu
    Copy the full SHA
    45445cf View commit details
    Browse the repository at this point in the history

  3. fixed implementation of unflatten for arrays

    @torfjelde
    torfjelde committed Jul 10, 2022
    Configuration menu
    Copy the full SHA
    ea8f844 View commit details
    Browse the repository at this point in the history

  4. added default impl of unflatten taking sampler

    @torfjelde
    torfjelde committed Jul 10, 2022
    Configuration menu
    Copy the full SHA
    52274ba View commit details
    Browse the repository at this point in the history

Commits on Jul 12, 2022

  1. improved tonamedtuple for SimpleVarInfo with Dict

    @torfjelde
    torfjelde committed Jul 12, 2022
    Configuration menu
    Copy the full SHA
    7da0ee9 View commit details
    Browse the repository at this point in the history

  2. added marginal_mean_of_samples according to suggestions

    @torfjelde
    torfjelde committed Jul 12, 2022
    Configuration menu
    Copy the full SHA
    b3499a3 View commit details
    Browse the repository at this point in the history

Commits on Jul 13, 2022

  1. removed example_values in favour of rand with NamedTuple

    @torfjelde
    torfjelde committed Jul 13, 2022
    Configuration menu
    Copy the full SHA
    2bd5dcd View commit details
    Browse the repository at this point in the history

  2. updated docs

    @torfjelde
    torfjelde committed Jul 13, 2022
    Configuration menu
    Copy the full SHA
    61a594c View commit details
    Browse the repository at this point in the history

  3. Merge branch 'tor/test-utils-improvements' into tor/simple-varinfo-li… 

    …nearization
    @torfjelde
    torfjelde committed Jul 13, 2022
    Configuration menu
    Copy the full SHA
    ce5f6e4 View commit details
    Browse the repository at this point in the history

Commits on Jul 18, 2022

  1. fixed method ambiguity error

    @torfjelde
    torfjelde committed Jul 18, 2022
    Configuration menu
    Copy the full SHA
    6c941bd View commit details
    Browse the repository at this point in the history

  2. added islinked for SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 18, 2022
    Configuration menu
    Copy the full SHA
    5e92e56 View commit details
    Browse the repository at this point in the history

  3. formatting

    @torfjelde
    torfjelde committed Jul 18, 2022
    Configuration menu
    Copy the full SHA
    aabc45a View commit details
    Browse the repository at this point in the history

  4. added link!! and invlink!! as BangBang alternatives to link! and invl… 

    …ink!
    @torfjelde
    torfjelde committed Jul 18, 2022
    Configuration menu
    Copy the full SHA
    939540c View commit details
    Browse the repository at this point in the history

  5. added specialized implementation for NamedBijector and SimpleVarInfo 

    when used together
    @torfjelde
    torfjelde committed Jul 18, 2022
    Configuration menu
    Copy the full SHA
    aecf97f View commit details
    Browse the repository at this point in the history

Commits on Jul 19, 2022

  1. use inverse instead of inv

    @torfjelde
    torfjelde committed Jul 19, 2022
    Configuration menu
    Copy the full SHA
    9dcefdb View commit details
    Browse the repository at this point in the history

  2. preserve DefaultTransformation

    @torfjelde
    torfjelde committed Jul 19, 2022
    Configuration menu
    Copy the full SHA
    fd0796b View commit details
    Browse the repository at this point in the history

Commits on Jul 23, 2022

  1. Merge branch 'master' into tor/simple-varinfo-linearization

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    2ef1f59 View commit details
    Browse the repository at this point in the history

  2. removed duplicated defs

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    94e5d48 View commit details
    Browse the repository at this point in the history

  3. style

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    15fdf19 View commit details
    Browse the repository at this point in the history

  4. fixed empty!! and added isempty for SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    48dfb9c View commit details
    Browse the repository at this point in the history

  5. added setindex!! for sampler with SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    70ba82d View commit details
    Browse the repository at this point in the history

  6. made values_as compatible with empty SimpleVarInfo

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    d3bff26 View commit details
    Browse the repository at this point in the history

  7. added tests for base functionality for SimpleVarInfo too

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    b14e9cf View commit details
    Browse the repository at this point in the history

  8. renamed bijectors.jl to transforming.jl

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    9f106fa View commit details
    Browse the repository at this point in the history

  9. fixed update of logp after initialize_parameters!!

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    bf34356 View commit details
    Browse the repository at this point in the history

  10. remove now-redundant todo

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    3e5f763 View commit details
    Browse the repository at this point in the history

  11. improved the initial step

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    e649f37 View commit details
    Browse the repository at this point in the history

  12. fixed bug with initialize_parameters!! introduced in previous commit

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    5941270 View commit details
    Browse the repository at this point in the history

  13. Update src/sampler.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Jul 23, 2022
    Configuration menu
    Copy the full SHA
    f30b875 View commit details
    Browse the repository at this point in the history

  14. add some comments on tonamedtuple

    @torfjelde
    torfjelde committed Jul 23, 2022
    Configuration menu
    Copy the full SHA
    cb3e1f4 View commit details
    Browse the repository at this point in the history

Commits on Jul 24, 2022

  1. Apply suggestions from code review 

    Co-authored-by: David Widmann <[email protected]>
    @torfjelde @devmotion
    torfjelde and devmotion authored Jul 24, 2022
    Configuration menu
    Copy the full SHA
    f79fab4 View commit details
    Browse the repository at this point in the history

  2. Update src/transforming.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Jul 24, 2022
    Configuration menu
    Copy the full SHA
    58c2550 View commit details
    Browse the repository at this point in the history

  3. renamed make_default_varinfo to default_varinfo

    @torfjelde
    torfjelde committed Jul 24, 2022
    Configuration menu
    Copy the full SHA
    c316e70 View commit details
    Browse the repository at this point in the history

  4. simplified impls of getindex

    @torfjelde
    torfjelde committed Jul 24, 2022
    Configuration menu
    Copy the full SHA
    998fcf4 View commit details
    Browse the repository at this point in the history

  5. Apply suggestions from code review 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Jul 24, 2022
    Configuration menu
    Copy the full SHA
    0913a24 View commit details
    Browse the repository at this point in the history

  6. made impls of default getindex for VarInfo a bit more sensible

    @torfjelde
    torfjelde committed Jul 24, 2022
    Configuration menu
    Copy the full SHA
    9af2638 View commit details
    Browse the repository at this point in the history

  7. removed unnecessary namespace specification

    @torfjelde
    torfjelde committed Jul 24, 2022
    Configuration menu
    Copy the full SHA
    482ade7 View commit details
    Browse the repository at this point in the history

  8. use isempty(vi) instead of checking its values

    @torfjelde
    torfjelde committed Jul 24, 2022
    Configuration menu
    Copy the full SHA
    b79bf28 View commit details
    Browse the repository at this point in the history

  9. fix values_as for certain combinations

    @torfjelde
    torfjelde committed Jul 24, 2022
    Configuration menu
    Copy the full SHA
    15087c5 View commit details
    Browse the repository at this point in the history

Commits on Jul 25, 2022

  1. added deprecation warnings for link! and invlink!

    @torfjelde
    torfjelde committed Jul 25, 2022
    Configuration menu
    Copy the full SHA
    88dbdca View commit details
    Browse the repository at this point in the history

Commits on Jul 27, 2022

  1. add logabsdet-jacobian term in link! and invlink!

    @torfjelde
    torfjelde committed Jul 27, 2022
    Configuration menu
    Copy the full SHA
    9b3c40f View commit details
    Browse the repository at this point in the history

  2. use context to implement link!! and invlink!!

    @torfjelde
    torfjelde committed Jul 27, 2022
    Configuration menu
    Copy the full SHA
    57d321c View commit details
    Browse the repository at this point in the history

  3. added tests for link!! and invlink!!

    @torfjelde
    torfjelde committed Jul 27, 2022
    Configuration menu
    Copy the full SHA
    4409149 View commit details
    Browse the repository at this point in the history

  4. added a note comment

    @torfjelde
    torfjelde committed Jul 27, 2022
    Configuration menu
    Copy the full SHA
    c34f257 View commit details
    Browse the repository at this point in the history

  5. renamed DefaultTransformation to LazyTransformation and 

    BijectorTransformation to StaticTransformation
    @torfjelde
    torfjelde committed Jul 27, 2022
    Configuration menu
    Copy the full SHA
    73765e7 View commit details
    Browse the repository at this point in the history

  6. added maybe_invlink_before_eval!! allowing invlinking once

    @torfjelde
    torfjelde committed Jul 27, 2022
    Configuration menu
    Copy the full SHA
    0c0c393 View commit details
    Browse the repository at this point in the history

  7. formatting

    @torfjelde
    torfjelde committed Jul 27, 2022
    Configuration menu
    Copy the full SHA
    5e51755 View commit details
    Browse the repository at this point in the history

Commits on Jul 28, 2022

  1. use OrderedDict instead of Dict for SimpleVarInfo as it preserves the 

    order of insertion
    @torfjelde
    torfjelde committed Jul 28, 2022
    Configuration menu
    Copy the full SHA
    3dbc7a9 View commit details
    Browse the repository at this point in the history

Commits on Jul 29, 2022

  1. added compat entry for OrderedCollections

    @torfjelde
    torfjelde committed Jul 29, 2022
    Configuration menu
    Copy the full SHA
    809de9a View commit details
    Browse the repository at this point in the history

Commits on Jul 30, 2022

  1. added compat entry for OrderedCollections

    @torfjelde
    torfjelde committed Jul 30, 2022
    Configuration menu
    Copy the full SHA
    656175f View commit details
    Browse the repository at this point in the history

  2. use OrderedDict instead of Dict for SimpleVarInfo as it preserves the 

    order of insertion
    @torfjelde
    torfjelde committed Jul 30, 2022
    Configuration menu
    Copy the full SHA
    a225978 View commit details
    Browse the repository at this point in the history

  3. improvements to values_as

    @torfjelde
    torfjelde committed Jul 30, 2022
    Configuration menu
    Copy the full SHA
    fce67ee View commit details
    Browse the repository at this point in the history

  4. export values_as

    @torfjelde
    torfjelde committed Jul 30, 2022
    Configuration menu
    Copy the full SHA
    b165b35 View commit details
    Browse the repository at this point in the history

  5. added values_as to docs

    @torfjelde
    torfjelde committed Jul 30, 2022
    Configuration menu
    Copy the full SHA
    af9c520 View commit details
    Browse the repository at this point in the history

  6. added proper testing for values_as

    @torfjelde
    torfjelde committed Jul 30, 2022
    Configuration menu
    Copy the full SHA
    47c30e3 View commit details
    Browse the repository at this point in the history

  7. bump patch version

    @torfjelde
    torfjelde committed Jul 30, 2022
    Configuration menu
    Copy the full SHA
    40477a4 View commit details
    Browse the repository at this point in the history

  8. Apply suggestions from code review

    @torfjelde
    torfjelde authored Jul 30, 2022
    Configuration menu
    Copy the full SHA
    a972f8e View commit details
    Browse the repository at this point in the history

Commits on Aug 18, 2022

  1. use ConstructionBase explicitly

    @torfjelde
    torfjelde committed Aug 18, 2022
    Configuration menu
    Copy the full SHA
    ab2a8b5 View commit details
    Browse the repository at this point in the history

  2. use OrderedDict in rand instead of NamedTuple as it supports arbitrar… 

    …y models
    @torfjelde
    torfjelde committed Aug 18, 2022
    Configuration menu
    Copy the full SHA
    ee7fcd6 View commit details
    Browse the repository at this point in the history

Commits on Aug 19, 2022

  1. Merge branch 'tor/minor-varinfo-improvements' into tor/simple-varinfo… 

    …-linearization
    @torfjelde
    torfjelde committed Aug 19, 2022
    Configuration menu
    Copy the full SHA
    a44e712 View commit details
    Browse the repository at this point in the history

Commits on Sep 7, 2022

  1. Merge branch 'master' into tor/simple-varinfo-linearization

    @torfjelde
    torfjelde committed Sep 7, 2022
    Configuration menu
    Copy the full SHA
    3e869ff View commit details
    Browse the repository at this point in the history

Commits on Sep 9, 2022

  1. Merge branch 'master' into tor/simple-varinfo-linearization

    @torfjelde
    torfjelde committed Sep 9, 2022
    Configuration menu
    Copy the full SHA
    08de024 View commit details
    Browse the repository at this point in the history

  2. properly deprecate link! and invlink!

    @torfjelde
    torfjelde committed Sep 9, 2022
    Configuration menu
    Copy the full SHA
    0082505 View commit details
    Browse the repository at this point in the history

  3. added transformation impls for ThreadSafeVarInfo

    @torfjelde
    torfjelde committed Sep 9, 2022
    Configuration menu
    Copy the full SHA
    597dfda View commit details
    Browse the repository at this point in the history

  4. added missing impl of values_as for VarInfo and Vector

    @torfjelde
    torfjelde committed Sep 9, 2022
    Configuration menu
    Copy the full SHA
    be7ae6c View commit details
    Browse the repository at this point in the history

  5. use inverse instead of deprecated inv

    @torfjelde
    torfjelde committed Sep 9, 2022
    Configuration menu
    Copy the full SHA
    8dfc7c0 View commit details
    Browse the repository at this point in the history

  6. Update src/transforming.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @torfjelde @github-actions
    torfjelde and github-actions[bot] authored Sep 9, 2022
    Configuration menu
    Copy the full SHA
    e475c87 View commit details
    Browse the repository at this point in the history

  7. renamed nested_haskey and defined common method called getvalue and 

    hasvalue
    @torfjelde
    torfjelde committed Sep 9, 2022
    Configuration menu
    Copy the full SHA
    1e6b0a9 View commit details
    Browse the repository at this point in the history

  8. Merge branch 'tor/simple-varinfo-linearization' of github.com:TuringL… 

    …ang/DynamicPPL.jl into tor/simple-varinfo-linearization
    @torfjelde
    torfjelde committed Sep 9, 2022
    Configuration menu
    Copy the full SHA
    ce5757a View commit details
    Browse the repository at this point in the history

  9. minor version bump

    @torfjelde
    torfjelde committed Sep 9, 2022
    Configuration menu
    Copy the full SHA
    e23763b View commit details
    Browse the repository at this point in the history

Commits on Oct 6, 2022

  1. removed unnecessary and confusing constructor

    @torfjelde
    torfjelde committed Oct 6, 2022
    Configuration menu
    Copy the full SHA
    43b034d View commit details
    Browse the repository at this point in the history

Commits on Oct 19, 2022

  1. added TODO comment to deprecate

    @torfjelde
    torfjelde committed Oct 19, 2022
    Configuration menu
    Copy the full SHA
    5c7df84 View commit details
    Browse the repository at this point in the history

Commits on Oct 24, 2022

  1. renamed LazyTransformation to DynamicTransformation

    @torfjelde
    torfjelde committed Oct 24, 2022
    Configuration menu
    Copy the full SHA
    5c7163d View commit details
    Browse the repository at this point in the history

  2. updated docs and docstrings

    @torfjelde
    torfjelde committed Oct 24, 2022
    Configuration menu
    Copy the full SHA
    5f21dd7 View commit details
    Browse the repository at this point in the history

Commits on Oct 25, 2022

  1. Update docs/make.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @yebai @github-actions
    yebai and github-actions[bot] authored Oct 25, 2022
    Configuration menu
    Copy the full SHA
    e044676 View commit details
    Browse the repository at this point in the history

  2. increased tolerance in one of the tests

    @torfjelde
    torfjelde committed Oct 25, 2022
    Configuration menu
    Copy the full SHA
    effec2b View commit details
    Browse the repository at this point in the history

  3. Merge branch 'tor/simple-varinfo-linearization' of github.com:TuringL… 

    …ang/DynamicPPL.jl into tor/simple-varinfo-linearization
    @torfjelde
    torfjelde committed Oct 25, 2022
    Configuration menu
    Copy the full SHA
    c7240ab View commit details
    Browse the repository at this point in the history

  4. increase tolerance of tests

    @torfjelde
    torfjelde committed Oct 25, 2022
    Configuration menu
    Copy the full SHA
    5fabd07 View commit details
    Browse the repository at this point in the history

  5. updated docs for varinfos, in particular the shared interface

    @torfjelde
    torfjelde committed Oct 25, 2022
    Configuration menu
    Copy the full SHA
    2e0fe49 View commit details
    Browse the repository at this point in the history

Commits on Oct 27, 2022

  1. big refactoring of the varinfo related implementations and docs

    @torfjelde
    torfjelde committed Oct 27, 2022
    Configuration menu
    Copy the full SHA
    965fcf5 View commit details
    Browse the repository at this point in the history

  2. Update src/abstract_varinfo.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @yebai @github-actions
    yebai and github-actions[bot] authored Oct 27, 2022
    Configuration menu
    Copy the full SHA
    200a886 View commit details
    Browse the repository at this point in the history

  3. Update src/abstract_varinfo.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @yebai @github-actions
    yebai and github-actions[bot] authored Oct 27, 2022
    Configuration menu
    Copy the full SHA
    5a0296e View commit details
    Browse the repository at this point in the history

  4. Update src/varinfo.jl 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    @yebai @github-actions
    yebai and github-actions[bot] authored Oct 27, 2022
    Configuration menu
    Copy the full SHA
    a2e332e View commit details
    Browse the repository at this point in the history

Commits on Oct 29, 2022

  1. Update varinfo.jl

    @yebai
    yebai authored Oct 29, 2022
    Configuration menu
    Copy the full SHA
    d950635 View commit details
    Browse the repository at this point in the history

Commits on Oct 31, 2022

  1. fixed bugs with linking

    @torfjelde
    torfjelde committed Oct 31, 2022
    Configuration menu
    Copy the full SHA
    e0907c1 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'tor/simple-varinfo-linearization' of github.com:TuringL… 

    …ang/DynamicPPL.jl into tor/simple-varinfo-linearization
    @torfjelde
    torfjelde committed Oct 31, 2022
    Configuration menu
    Copy the full SHA
    6aceac4 View commit details
    Browse the repository at this point in the history

  3. fixed threadsafevarinfo issues

    @torfjelde
    torfjelde committed Oct 31, 2022
    Configuration menu
    Copy the full SHA
    e5d8984 View commit details
    Browse the repository at this point in the history

Commits on Nov 1, 2022

  1. added tests for StaticBijector

    @torfjelde
    torfjelde committed Nov 1, 2022
    Configuration menu
    Copy the full SHA
    63b3638 View commit details
    Browse the repository at this point in the history

  2. added impl of maybe_invlink_before_eval!! for VarInfo

    @torfjelde
    torfjelde committed Nov 1, 2022
    Configuration menu
    Copy the full SHA
    3ffeef1 View commit details
    Browse the repository at this point in the history

  3. fixed bug in invlink!! for StaticBijector

    @torfjelde
    torfjelde committed Nov 1, 2022
    Configuration menu
    Copy the full SHA
    8ed91ec View commit details
    Browse the repository at this point in the history

  4. added maybe_invlink_before_eval!! impl for ThreadSafeVarInfo

    @torfjelde
    torfjelde committed Nov 1, 2022
    Configuration menu
    Copy the full SHA
    8ddfb4c View commit details
    Browse the repository at this point in the history

  5. fixed bug in doctests

    @torfjelde
    torfjelde committed Nov 1, 2022
    Configuration menu
    Copy the full SHA
    3246cf4 View commit details
    Browse the repository at this point in the history

Commits on Nov 2, 2022

  1. relax constraint on istrans

    @torfjelde
    torfjelde committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    74b5d93 View commit details
    Browse the repository at this point in the history

  2. fixed unflatten for Dict to respect the original type

    @torfjelde
    torfjelde committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    c6264e5 View commit details
    Browse the repository at this point in the history

  3. suggest using OrderedDict instead of Dict in docstrings

    @torfjelde
    torfjelde committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    da04c7b View commit details
    Browse the repository at this point in the history

  4. fixed doctest

    @torfjelde
    torfjelde committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    41fd89a View commit details
    Browse the repository at this point in the history

  5. added docs for unflatten for varinfos

    @torfjelde
    torfjelde committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    e7b8b10 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'master' into tor/simple-varinfo-linearization

    @yebai
    yebai authored Nov 2, 2022
    Configuration menu
    Copy the full SHA
    732e94b View commit details
    Browse the repository at this point in the history

Commits on Nov 3, 2022

  1. added comment to explain settrans!! for VarInfo

    @torfjelde
    torfjelde committed Nov 3, 2022
    Configuration menu
    Copy the full SHA
    1c1b6ed View commit details
    Browse the repository at this point in the history

  2. renamed MaybeThreadSafeVarInfo

    @torfjelde
    torfjelde committed Nov 3, 2022
    Configuration menu
    Copy the full SHA
    fbf9e0a View commit details
    Browse the repository at this point in the history

  3. added comment on maybe_inlink_before_eval!!

    @torfjelde
    torfjelde committed Nov 3, 2022
    Configuration menu
    Copy the full SHA
    a427983 View commit details
    Browse the repository at this point in the history

  4. removed unnecessary defs in tests

    @torfjelde
    torfjelde committed Nov 3, 2022
    Configuration menu
    Copy the full SHA
    6b126b8 View commit details
    Browse the repository at this point in the history

  5. formatting

    @torfjelde
    torfjelde committed Nov 3, 2022
    Configuration menu
    Copy the full SHA
    d715b0c View commit details
    Browse the repository at this point in the history