Code

General improvements and fixes#133

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yebai merged 52 commits intomainTuringLang/MCMCTempering.jl:mainfrom tor/improvementsTuringLang/MCMCTempering.jl:tor/improvementsCopy head branch name to clipboardDec 4, 2022

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Commits

Commits on Sep 11, 2021

• additional deps and test deps

  torfjelde

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  4d48a35

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Commits on Oct 4, 2021

• updated stepping code to use AbstractSwapStrategy and made TemperedSampler concrete

  torfjelde

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• made TemperedSampler concretely typed and fixed soem docs

  torfjelde

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• introduced AbstractSwapStrategy and removed get_params and make_tempered_loglikelihood

  torfjelde

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• updated stepping.jl

  torfjelde

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• added docstring for make_tempered_model

  torfjelde

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• updated adaptation.jl and made structs concrete

  torfjelde

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• updated ladders.jl

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Commits on Oct 13, 2021

• addressed some comments

  torfjelde

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  3fb13e9

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• added tests

  torfjelde

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  90e60f2

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• fixed a bug

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Commits on Oct 20, 2021

• updated the StateHistoryCallback a bit

  torfjelde

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• made the distinction between chains and processes clearer

  torfjelde

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  3bb79df

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• added tests

  torfjelde

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  90722c9

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• fixed incorrect statement

  torfjelde

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• renamed some fields to be more descriptive and fixed left-over bug

  torfjelde

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  0c204ac

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• updated tests

  torfjelde

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• removed some show from tests

  torfjelde

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• began updating docstrings

  torfjelde

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Commits on Oct 21, 2021

• fixed docstring for TemeperedState

  torfjelde

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• fix exports

  torfjelde

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  696d8d1

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• a bunch of renaming

  torfjelde

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  bbb2fc2

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• deleted plotting functionality

  torfjelde

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  8ac7374

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• fixed bug and added should_swap method

  torfjelde

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  f7c46e7

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• improved tests

  torfjelde

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Commits on Nov 20, 2021

• Typo

  ParadaCarleton

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  287b501

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• Typo

  ParadaCarleton

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Commits on Dec 7, 2021

• implemented adaptation scheme for inverse temperatures using a geometric schedule

  torfjelde

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  8c1b8ff

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• made some changes to some code that I cannot understand the original intent behind

  torfjelde

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• added parameter for controlling which type of schedule to use when adapting the temperatures

  torfjelde

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Commits on Dec 16, 2021

• make number of steps taken for each adaptor part of their state

  torfjelde

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Commits on Nov 14, 2022

• improvements to parameterization of the adaptation techniques

  torfjelde

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• updated test env

  torfjelde

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• keep track of swapping ratios

  torfjelde

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• tests are now runnable

  torfjelde

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• commented out unused code

  torfjelde

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Commits on Nov 16, 2022

• Corrected typo

  HarrisonWilde

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• Added 1D GMM, sort of works for it

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• Make StandardSwap the default strategy when one

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• Fixing test case for GMM

  HarrisonWilde

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• Implementing burn-in, introduces depedency on StatsBase

  HarrisonWilde

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  910dc6d

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• Fixed error with burnin

  HarrisonWilde

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  a4437f9

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• cleaning up working_code

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  b9c6a90

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• QoL improvements on the code

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  79cbbf0

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• Removing StatsBase dependency and discard_initial override

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• Adding back accidentally deleted RandomPermutationSwap stuff

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Commits on Nov 17, 2022

• cleaned up testing a bit

  torfjelde

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• made the compute_tempered_logdensities a bit more general

  torfjelde

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• Implementing tempered_sample to allow for no-swap burn-in and easier usage

  HarrisonWilde

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• Tweaking sample call

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• Working burnin

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Commits on Dec 4, 2022

• Merge pull request #137 from TuringLang/harry/improvements_additions

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  yebai

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