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Extracellular Vesicle Contents of Mouse Trophoblast Cells and Their Predicted Influence on Fetal Brain Development

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Tuteja-Lab/mouse.trophoblast.smallRNAseq

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Mouse Trophoblast smallRNAseq analyses

Performed at Tuteja Lab, Iowa State University, Ames IA-50011

Documentation

The Wiki for the entire analyses is provided in this R-markdown files 1_smallRNAseq.Rmd and 2_proteomics.Rmd. The rendered html file is accessible on this link. Links for the sections are provided below:

  1. Small RNAseq analyses
  2. Proteomics analyses
  3. Bulk RNA-seq analyses

Data availability

  • Small RNAseq data available for download upon publication from NCBI GEO GSE222855
  • Proteomics data available for download upon pulication from Massive UCSD repository

Contacts

  1. Project related questions: Geetu Tuteja
  2. Scripts and workflow related questions: please open an issue here on GitHub.

Publication

If you use the scripts from this repository in your research, please cite this publication:

Jessica A Kinkade, Arun S Seetharam, Shrikesh Sachdev, Nathan J Bivens, Brett S Phinney, Gabriela Grigorean, R Michael Roberts, Geetu Tuteja, Cheryl S Rosenfeld, Extracellular vesicles from mouse trophoblast cells: Effects on neural progenitor cells and potential participants in the placenta–brain axis, Biology of Reproduction, Volume 110, Issue 2, February 2024, Pages 310–328, DOI: 10.1093/biolre/ioad146

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