update for R4.0

r-dsci-100/Dockerfile

@@ -7,20 +7,25 @@ LABEL maintainer="Tiffany Timbers <[email protected]>"
 
 # R packages on conda-forge
 RUN conda install --quiet --yes -c conda-forge \
-  r-infer=0.4* \
-  r-rtsne=0* \
-  r-ggally=1.4* \
-  r-gridextra=2.3* \
-  r-testthat=2.1* \
-  r-rpostgres=1.1*
+  r-cowplot=1.* \
+  r-ggally=1.5.* \
+  r-gridextra=2.3.* \
+  r-infer=0.5.* \
+  r-testthat=2.3.* \
+  r-rpostgres=1.2.*
 
 USER root
 RUN pip install git+https://github.com/data-8/nbgitpuller \
-    && jupyter serverextension enable --sys-prefix nbgitpuller
+    && jupyter serverextension enable --sys-prefix nbgitpuller \
+    && jupyter labextension install @jupyterlab/git \
+    && pip install jupyterlab-git \
+    && jupyter serverextension enable --py jupyterlab_git \
+    && pip install jupytext --upgrade \
+    && jupyter lab build  
 RUN useradd -m -s /bin/bash -N -u 9999 jupyter
 USER jupyter
 # Configure environment
 ENV NB_USER=jupyter \
     NB_UID=9999
 ENV HOME=/home/$NB_USER
-WORKDIR $HOME
+WORKDIR $HOME

r-dsci-grading/Dockerfile

@@ -5,17 +5,15 @@ FROM $BASE_CONTAINER
 
 LABEL maintainer="Tiffany Timbers <[email protected]>"
 
-RUN conda install --quiet --yes -c anaconda jupyter_client \
-  python-dateutil
+USER root
 
 # install Rise slide extension
 RUN conda install --quiet --yes -c conda-forge rise
 
-# install nbgrader and fix run issues
-RUN pip install alembic
-RUN pip install git+https://github.com/jupyter/nbgrader
-RUN yes | pip uninstall ipython
-RUN pip install ipykernel
-RUN jupyter nbextension install --sys-prefix --py nbgrader --overwrite
+# install nbgrader 
+RUN pip install nbgrader==0.6.1
+RUN jupyter nbextension install --sys-prefix --py nbgrader --overwrite 
 RUN jupyter nbextension enable --sys-prefix --py nbgrader
-RUN jupyter serverextension enable --sys-prefix --py nbgrader
+RUN jupyter serverextension enable --sys-prefix --py nbgrader
+
+USER $NB_UIDenable --sys-prefix --py nbgrader