The MDSvis package implements visualization of Multi Dimensional Scaling (MDS)
objects representing a low dimensional projection of cytometry samples.
Such objects can be obtained using the functionalities implemented in the
CytoMDS package. The visualization is realised via a Shiny app that allows
the user to interactively customise the plots depending on a series of input
parameters.
Below a screenshot of the app 'View' tab. The controls on the side allow to
choose the projection axes, colour, label, or shape the points according to
phenodata variables, add biplot, show a plotly plot for interactive plot
exploration or flip axes.
The MDSvis code is provided under GPL license version 3.0 or
higher. The documentation,
including the manual pages and the vignettes, are distributed under a CC BY-SA
4.0 license.
If you use MDSvis in your research, please use the following citation:
Hauchamps, Philippe, Simon Delandre, Stephane T. Temmerman, Dan Lin, and Laurent Gatto. 2024. “Visual Quality Control with CytoMDS, a Bioconductor Package for Low Dimensional Representation of Cytometry Sample Distances.” bioRxiv. https://doi.org/10.1101/2024.07.01.601465.