R-test #59

	name: R-test

	on:
	push:
	branches:
	[main, dev]
	pull_request:
	branches:
	[main]
	schedule:
	- cron: '11 1 1 * *'
	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	jobs:
	R-test:
	name: python ${{ matrix.python-version }}, ${{ matrix.os }}
	runs-on: ${{ matrix.os }}
	env:
	REPO_NAME: ${{ github.event.repository.name }}

	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: ['3.8', '3.9', '3.10', '3.11']
	include:
	- os: windows-latest
	python-version: "3.9"
	steps:
	- uses: actions/checkout@v3

	- name: Install/set-up conda
	uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	auto-activate-base: true
	activate-environment: ""

	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: 'release'

	#- uses: r-lib/actions/setup-renv@v2

	- uses: r-lib/actions/setup-pandoc@v2

	- name: Install testing pkgs
	run: \|
	conda install pytest
	conda install geopandas>=0.10.2, <0.13
	conda install numpy<2.0
	conda install pandas<2.0
	conda install pint>=0.18
	conda install dataretrieval>=1.0, <1.0.5
	conda install requests

	- name: Run env using R reticulate
	run: \|
	install.packages(c("knitr", "rmarkdown", "reticulate"))
	reticulate::import("harmonize_wq")
	shell: Rscript {0}

	- name: Render-rmd
	run: \|
	echo "Rendering the page..."
	Rscript -e 'rmarkdown::render(input = "demos/harmonize_Pensacola.Rmd")'

	- name: Run pytest
	run: pytest -v harmonize_wq

Provide feedback