62 review edits harmonize pensacolarmd #60

	name: R-test

	on:
	push:
	branches:
	[main, dev]
	pull_request:
	branches:
	[main]
	schedule:
	- cron: '11 1 1 * *'
	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	jobs:
	R-test:
	name: python ${{ matrix.python-version }}, ${{ matrix.os }}
	runs-on: ${{ matrix.os }}
	env:
	REPO_NAME: ${{ github.event.repository.name }}

	strategy:
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: ['3.8', '3.9', '3.10', '3.11']
	include:
	- os: windows-latest
	python-version: "3.9"
	steps:
	- uses: actions/checkout@v3

	- name: setup python
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.config.python }}

	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: 'release'

	#- uses: r-lib/actions/setup-renv@v2

	- uses: r-lib/actions/setup-pandoc@v2

	- name: R depends
	shell: Rscript {0}
	run: \|
	install.packages(c("knitr", "rmarkdown", "reticulate"))

	- name: setup r-reticulate venv
	shell: Rscript {0}
	run: \|
	library(reticulate)

	path_to_venv <- virtualenv_create(
	envname = "r-reticulate",
	python = Sys.which("python"), # placed on PATH by the setup-python action
	packages = c(
	"pytest", "numpy<2.0", "pandas<2.0", "geopandas>=0.10.2, <0.13", "pint>=0.18",
	"dataretrieval>=1.0, <1.0.5", "requests"
	)
	)

	- name: Render-rmd
	run: \|
	echo "Rendering the page..."
	Rscript -e 'rmarkdown::render(input = "demos/harmonize_Pensacola.Rmd")'

	- name: Run pytest
	run: pytest -v harmonize_wq

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