Run womtool on WDL files #11

	name: Womtool

	# Enable Buildkit and let compose use it to speed up image building
	env:
	DOCKER_BUILDKIT: 1
	COMPOSE_DOCKER_CLI_BUILD: 1

	on:
	pull_request:
	branches: [ "main" ]
	paths-ignore: [ "docs/**" ]

	push:
	branches: [ "main" ]
	paths-ignore: [ "docs/**" ]

	concurrency:
	group: ${{ github.head_ref \|\| github.run_id }}
	cancel-in-progress: true

	jobs:

	detect-wdl-files:
	runs-on: ubuntu-latest
	name: "Detect WDL files"
	outputs:
	matrix: ${{ steps.detect-files.outputs.matrix }}

	steps:

	- name: Checkout Code Repository
	uses: actions/checkout@v4

	- name: Detect WDL files
	id: detect-files
	run: \|
	# Find the WDL files
	wdl_files=`find . -name "*.wdl" -type f -print0 \| xargs -0`
	# Add double quotes and replace spaces with commas.
	wdl_files=\"${wdl_files// /\",\"}\"

	echo "matrix={\"wdl-file\":[$wdl_files]" >> $GITHUB_OUTPUT

	- name: Show WDL files
	run: echo "${{ steps.detect-files.outputs.matrix }}"

	run-womtool:
	needs: detect-wdl-files
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix: ${{ fromJSON(needs.detect-wdl-files.outputs.matrix) }}

	name: "Run womtool: ${{ matrix.wdl-file }}"

	steps:

	- name: Checkout Code Repository
	uses: actions/checkout@v4

	- name: Run womtool
	uses: UW-GAC/womtool-action@main
	with:
	wdl-file: ${{ matrix.wdl-file }}

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