Merge pull request #24 from UW-GAC/womtool-ci #13
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| name: Womtool | |
| # Enable Buildkit and let compose use it to speed up image building | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| COMPOSE_DOCKER_CLI_BUILD: 1 | |
| on: | |
| pull_request: | |
| branches: [ "main" ] | |
| paths-ignore: [ "docs/**" ] | |
| push: | |
| branches: [ "main" ] | |
| paths-ignore: [ "docs/**" ] | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| run-womtool: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| wdl-file: [ | |
| ./gsr_data_report.wdl, | |
| ./check_vcf_samples.wdl, | |
| ./pheno_qc/pheno_qc.wdl, | |
| ./validate_genotype_model.wdl, | |
| ./validate_gsr_model.wdl, | |
| ./validate_phenotype_model.wdl, | |
| ] | |
| name: "Run womtool: ${{ matrix.wdl-file }}" | |
| steps: | |
| - name: Checkout Code Repository | |
| uses: actions/checkout@v4 | |
| - name: Run womtool | |
| uses: UW-GAC/womtool-action@main | |
| with: | |
| wdl-file: ${{ matrix.wdl-file }} |