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@UcarLab

The Ucar Lab

Develops computational models using genome datasets to study gene regulation and identify hypotheses for genomic medicine.

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  1. AMULET AMULET Public

    A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

    Python 29 5

  2. iasva iasva Public

    Iteratively Adjusted Surrogate Variable Analysis

    R 8 1

  3. PEAS PEAS Public

    Code repository for PEAS (Predict Enhancers from ATAC-seq), including feature extraction files and easy to use python script for training enhancer models and predicting enhancers using MLP Neural N…

    Java 10 2

  4. BiFET BiFET Public

    A robust statistical test for TF footprint data analyses

    R 2 2

  5. Human-immune-aging-Server Human-immune-aging-Server Public

    human-immune-aging-server [shiny application]

    R 3

  6. CoRE-ATAC CoRE-ATAC Public

    Java 10 1

Repositories

Showing 10 of 30 repositories
  • Mammary_gland_aging Public

    Mammary gland aging project

    UcarLab/Mammary_gland_aging’s past year of commit activity
    HTML 0 1 0 0 Updated Jul 25, 2023
  • ucarlab.github.io Public Forked from greenelab/lab-website-template

    The Ucar Lab website

    UcarLab/ucarlab.github.io’s past year of commit activity
    SCSS 2 BSD-3-Clause 275 0 0 Updated Apr 17, 2023
  • AMULET Public

    A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

    UcarLab/AMULET’s past year of commit activity
    Python 29 GPL-3.0 5 10 1 Updated Jan 3, 2023
  • Scripts-Tutorials Public

    Repository for lab scripts and tutorials.

    UcarLab/Scripts-Tutorials’s past year of commit activity
    Python 0 0 0 0 Updated Nov 21, 2022
  • mice-aging-project Public

    Code for Karakaslar, Katiyar et al., Aging Cell 2023

    UcarLab/mice-aging-project’s past year of commit activity
    HTML 0 1 0 0 Updated Aug 21, 2022
  • Covid_19_Scripts Public
    UcarLab/Covid_19_Scripts’s past year of commit activity
    C 0 0 0 0 Updated Aug 16, 2022
  • CoRE-ATAC Public
    UcarLab/CoRE-ATAC’s past year of commit activity
    Java 10 MIT 1 3 0 Updated Mar 15, 2022
  • snATAC_AlignmentAggregator Public

    Aggregates alignments for single cell clusters to apply methods for bulk data. Also adjusts reads for the 9bp overhang.

    UcarLab/snATAC_AlignmentAggregator’s past year of commit activity
    Java 0 0 0 0 Updated Sep 27, 2021
  • GREGORHelper Public

    Helper scripts for running multiple GREGOR analyses in parallel.

    UcarLab/GREGORHelper’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Aug 26, 2021
  • iasva Public

    Iteratively Adjusted Surrogate Variable Analysis

    UcarLab/iasva’s past year of commit activity
    R 8 1 0 0 Updated Aug 23, 2021
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