Graphical User Interface for inspecting ngs log files using the ngsReports R package. Currently only supports Fastqc reports
To install required packages and the ngsReports base package follow the instructions below.
install.packages("BiocManager")
BiocManager::install('UofABioinformaticsHub/shinyNgsreports')
A simple user guide can be found here.
After loading both the base package ngsReports and the shiny app ngsReportsShiny the shiny app can simply be run using the
function fastqcShiny().
library(ngsReports)
library(shinyNgsreports)
fastqcShiny()
Data can then be imported by clicking the "Choose Files" button and navigating to your fastqc files. Plots will then be loaded automatically.
Please cite the ngsReports preprint:
@article{ward2018ngsreports,
title={ngsReports: An R Package for managing FastQC reports and other NGS related log files.},
author={Ward, Christopher M and To, Hien and Pederson, Stephen M},
journal={bioRxiv},
pages={313148},
year={2018},
publisher={Cold Spring Harbor Laboratory}
}