Merge pull request #24 from VirtualFlyBrain/vfb_pipeline_streamed

Vfb pipeline streamed
VirtualFlyBrain · Aug 10, 2024 · 97cd9b3 · 97cd9b3
2 parents 6f273f9 + bcb6b22
commit 97cd9b3
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diff --git a/Dockerfile b/Dockerfile
@@ -32,7 +32,7 @@ ENV KBserver=http://192.168.0.1:7474
 ENV KBuser=neo4j
 ENV KBpassword=password
 
-ENV GITBRANCH=ontology_chunks
+ENV GITBRANCH=master
 
 RUN pip3 install wheel requests psycopg2 pandas base36
 

diff --git a/process.sh b/process.sh
@@ -92,6 +92,7 @@ curl -i -X POST ${KBserver}/db/data/transaction/commit -u ${KBuser}:${KBpassword
 curl -i -X POST ${KBserver}/db/data/transaction/commit -u ${KBuser}:${KBpassword} -H 'Content-Type: application/json' -d '{"statements": [{"statement": "MATCH ()-[r]-() WHERE exists(r.block) DELETE r"}]}' >> ${VFB_DEBUG_DIR}/neo4j_change_label_to_rdfs.txt
 
 python3 ${SCRIPTS}neo4j_kb_export.py ${KBserver} ${KBuser} ${KBpassword} ${KB_FILE}
+robot merge -i $VFB_DOWNLOAD_DIR/kb_part_0.owl -i $VFB_DOWNLOAD_DIR/kb_part_1.owl -i $VFB_DOWNLOAD_DIR/kb_part_2.owl -i $VFB_DOWNLOAD_DIR/kb_part_3.owl -i $VFB_DOWNLOAD_DIR/kb_rels.owl -o ${KB_FILE}
 
 echo "VFBTIME:"
 date