Update figures

WorldFishCenter · Mar 4, 2024 · 122d003 · 122d003
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diff --git a/.DS_Store b/.DS_Store
diff --git a/data-raw/get-data.R b/data-raw/get-data.R
@@ -76,7 +76,7 @@ region_stats <-
 trips <- get_merged_trips(pars) %>% dplyr::filter(!is.na(landing_id))
 
 kobo_trips <-
-  trips %>%
+  kobo_trips %>%
   dplyr::mutate(
     landing_period = lubridate::floor_date(landing_date, unit = "month"),
     landing_id = as.character(landing_id),

diff --git a/data/kobo_trips.rda b/data/kobo_trips.rda
diff --git a/docs/404.html b/docs/404.html
@@ -117,6 +117,7 @@
 <li class="chapter" data-level="6.1" data-path="simple.html"><a href="simple.html#ml-model-interpretation"><i class="fa fa-check"></i><b>6.1</b> ML model interpretation</a></li>
 <li class="chapter" data-level="6.2" data-path="simple.html"><a href="simple.html#ml-model-explanation"><i class="fa fa-check"></i><b>6.2</b> ML model explanation</a></li>
 </ul></li>
+<li class="chapter" data-level="7" data-path="afigures.html"><a href="afigures.html"><i class="fa fa-check"></i><b>7</b> Alternative figures</a></li>
 <li class="chapter" data-level="" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i>References</a></li>
 <li class="divider"></li>
 <li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li>

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diff --git a/docs/afigures.html b/docs/afigures.html
@@ -0,0 +1,228 @@
+<!DOCTYPE html>
+<html lang="" xml:lang="">
+<head>
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+  <title>7 Alternative figures | Modelling scenarios for nutrient-sensitive fisheries management</title>
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+<meta name="author" content="Lorenzo Longobardi" />
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+
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+</style>
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+<link rel="stylesheet" href="style.css" type="text/css" />
+</head>
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+<body>
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+    <div class="book-summary">
+      <nav role="navigation">
+
+<ul class="summary">
+<li><a href="./">Modelling scenarios for nutrient-sensitive fisheries managemente</a></li>
+
+<li class="divider"></li>
+<li class="chapter" data-level="1" data-path="index.html"><a href="index.html"><i class="fa fa-check"></i><b>1</b> Content</a></li>
+<li class="chapter" data-level="2" data-path="data.html"><a href="data.html"><i class="fa fa-check"></i><b>2</b> Data</a>
+<ul>
+<li class="chapter" data-level="2.1" data-path="data.html"><a href="data.html#catch-weight-and-nutrional-content"><i class="fa fa-check"></i><b>2.1</b> Catch weight and nutrional content</a></li>
+<li class="chapter" data-level="2.2" data-path="data.html"><a href="data.html#checks-and-limitations"><i class="fa fa-check"></i><b>2.2</b> Checks and limitations</a></li>
+</ul></li>
+<li class="chapter" data-level="3" data-path="highlight.html"><a href="highlight.html"><i class="fa fa-check"></i><b>3</b> Highlight statistics</a>
+<ul>
+<li class="chapter" data-level="3.1" data-path="highlight.html"><a href="highlight.html#timor-est-ssf-nutritional-scenario"><i class="fa fa-check"></i><b>3.1</b> Timor-Est SSF nutritional scenario</a></li>
+</ul></li>
+<li class="chapter" data-level="4" data-path="distribution.html"><a href="distribution.html"><i class="fa fa-check"></i><b>4</b> Nutrients distribution</a>
+<ul>
+<li class="chapter" data-level="4.1" data-path="distribution.html"><a href="distribution.html#fish-groups"><i class="fa fa-check"></i><b>4.1</b> Fish groups</a></li>
+<li class="chapter" data-level="4.2" data-path="distribution.html"><a href="distribution.html#habitat-and-gear-type"><i class="fa fa-check"></i><b>4.2</b> Habitat and gear type</a></li>
+<li class="chapter" data-level="4.3" data-path="distribution.html"><a href="distribution.html#nutritional-contribution-and-economic-profiling"><i class="fa fa-check"></i><b>4.3</b> Nutritional contribution and economic profiling</a></li>
+</ul></li>
+<li class="chapter" data-level="5" data-path="profiles.html"><a href="profiles.html"><i class="fa fa-check"></i><b>5</b> Timor SSF nutritional profiles</a>
+<ul>
+<li class="chapter" data-level="5.1" data-path="profiles.html"><a href="profiles.html#methods"><i class="fa fa-check"></i><b>5.1</b> Methods</a>
+<ul>
+<li class="chapter" data-level="5.1.1" data-path="profiles.html"><a href="profiles.html#data-analysis-design-and-subset-division"><i class="fa fa-check"></i><b>5.1.1</b> Data analysis design and subset division</a></li>
+<li class="chapter" data-level="5.1.2" data-path="profiles.html"><a href="profiles.html#clustering-and-classification"><i class="fa fa-check"></i><b>5.1.2</b> Clustering and Classification</a></li>
+</ul></li>
+<li class="chapter" data-level="5.2" data-path="profiles.html"><a href="profiles.html#results"><i class="fa fa-check"></i><b>5.2</b> Results</a>
+<ul>
+<li class="chapter" data-level="5.2.1" data-path="profiles.html"><a href="profiles.html#clusters"><i class="fa fa-check"></i><b>5.2.1</b> Clusters</a></li>
+<li class="chapter" data-level="5.2.2" data-path="profiles.html"><a href="profiles.html#xgboost-model-performance"><i class="fa fa-check"></i><b>5.2.2</b> XGBoost model performance</a></li>
+</ul></li>
+<li class="chapter" data-level="5.3" data-path="profiles.html"><a href="profiles.html#preliminary-considerations"><i class="fa fa-check"></i><b>5.3</b> Preliminary considerations</a></li>
+</ul></li>
+<li class="chapter" data-level="6" data-path="simple.html"><a href="simple.html"><i class="fa fa-check"></i><b>6</b> In simple terms</a>
+<ul>
+<li class="chapter" data-level="6.1" data-path="simple.html"><a href="simple.html#ml-model-interpretation"><i class="fa fa-check"></i><b>6.1</b> ML model interpretation</a></li>
+<li class="chapter" data-level="6.2" data-path="simple.html"><a href="simple.html#ml-model-explanation"><i class="fa fa-check"></i><b>6.2</b> ML model explanation</a></li>
+</ul></li>
+<li class="chapter" data-level="7" data-path="afigures.html"><a href="afigures.html"><i class="fa fa-check"></i><b>7</b> Alternative figures</a></li>
+<li class="chapter" data-level="" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i>References</a></li>
+<li class="divider"></li>
+<li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li>
+
+</ul>
+
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+            <i class="fa fa-circle-o-notch fa-spin"></i><a href="./">Modelling scenarios for nutrient-sensitive fisheries management</a>
+          </h1>
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+
+            <section class="normal" id="section-">
+<div id="afigures" class="section level1 hasAnchor" number="7">
+<h1><span class="header-section-number">7</span> Alternative figures<a href="afigures.html#afigures" class="anchor-section" aria-label="Anchor link to header"></a></h1>
+<div class="figure"><span style="display:block;" id="fig:unnamed-chunk-14"></span>
+<img src="Timor-nutrient-sensitive-fisheries-management_files/figure-html/unnamed-chunk-14-1.png" alt="To define" width="1128" />
+<p class="caption">
+Figure 7.1: To define
+</p>
+</div>
+
+</div>
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diff --git a/docs/data.html b/docs/data.html
@@ -117,6 +117,7 @@
 <li class="chapter" data-level="6.1" data-path="simple.html"><a href="simple.html#ml-model-interpretation"><i class="fa fa-check"></i><b>6.1</b> ML model interpretation</a></li>
 <li class="chapter" data-level="6.2" data-path="simple.html"><a href="simple.html#ml-model-explanation"><i class="fa fa-check"></i><b>6.2</b> ML model explanation</a></li>
 </ul></li>
+<li class="chapter" data-level="7" data-path="afigures.html"><a href="afigures.html"><i class="fa fa-check"></i><b>7</b> Alternative figures</a></li>
 <li class="chapter" data-level="" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i>References</a></li>
 <li class="divider"></li>
 <li><a href="https://github.com/rstudio/bookdown" target="blank">Published with bookdown</a></li>