New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Is there a problem providing sorted bam files to rMATS? #118

Open

Sahu-Mousumi opened this issue Jan 10, 2024 · 1 comment

Sahu-Mousumi commented Jan 10, 2024

Hi,
I have processed sorted bam files for rMATS AS analysis. Will there be any problem?

Thank you,
Mousumi

Contributor

EricKutschera commented Jan 10, 2024

rMATS can use sorted or unsorted bam files

This is the rmats2sashimiplot repo and rmats2sashimiplot does require sorted bam files

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment