Skip to content

Issues: Xinglab/rmats2sashimiplot

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

29 Open 82 Closed
29 Open 82 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error when running on rMATS generated BAM files
#139 opened Nov 6, 2024 by nicholas-moskwa
5
Got a similar issue that was reported before (Issues # 72, and 115). I am not sure how to fix it after saving the -e SE JC file as tab delimited text
#138 opened Oct 31, 2024 by nbizzozero
8
Clarification on Exon Inclusion Representation in Visualizations
#137 opened Oct 29, 2024 by COOL005
3
Rmats image
#135 opened Sep 9, 2024 by alquamalok22
1
error? IndexError: index 90838 is out of bounds for axis 0 with size 90771
#134 opened Sep 4, 2024 by divinehui
10
Potential bugs in the rmats2sashimiplot visualization
#133 opened Aug 16, 2024 by mumdark
4
rMATS-long and rmats2sashimiplot
#131 opened May 18, 2024 by suiyue7
1
Error checking bam files
#130 opened May 8, 2024 by RaghdaKailany
1
Analyzing pair analysis data
#129 opened May 7, 2024 by tanya-lasagne
3
AttributeError: 'pysam.calignmentfile.AlignedSegment' object has no attribute 'reference_name'
#128 opened Apr 21, 2024 by kerendanan1511
1
2to3.sh not working
#127 opened Apr 19, 2024 by AleixPalahi
1
Filter average 0 junction read on the plot
#125 opened Mar 26, 2024 by Qingru44004
1
sashimi group
#124 opened Mar 25, 2024 by Qingru44004
3
Separate label for each sample in --b1
#122 opened Feb 22, 2024 by dmgie
Help to understand group sashimi plot
#120 opened Jan 29, 2024 by Sahu-Mousumi
1
Help with rmats2sashimiplot
#119 opened Jan 10, 2024 by Sahu-Mousumi
1
Is there a problem providing sorted bam files to rMATS?
#118 opened Jan 10, 2024 by Sahu-Mousumi
1
UserWarning: set_ticklabels() should only be used with a fixed number of ticks
#117 opened Jan 8, 2024 by Qingru44004
1
'nan' in sashimiplot PDF file
#116 opened Dec 5, 2023 by bioPG
4
ValueError: 'chr' is not in list
#115 opened Nov 24, 2023 by Portulaca666
1
Test example data: No entries found for gene chr16:9000:25001:+ in GFF
#114 opened Nov 9, 2023 by yangchuhua
1
IOError: truncated file
#113 opened Nov 9, 2023 by deb0612
3
Why is the line between two exons not shown when the inclusive isoform count is 0?
#112 opened Nov 8, 2023 by bioPG
6
About RPKM duplicate
#111 opened Nov 8, 2023 by ESWRKJ
1
First/Last sample in each grouping always return nan
#110 opened Oct 30, 2023 by EspressoKris
4
ProTip! What’s not been updated in a month: updated:<2024-10-23.