fix: fix d3 bundled multiple times

* update `d3` version to `7.8.5` exclude the `7.4.0` version
* override `d3-sankey` and `@types/d3-sankey` dependencies versions
* move `@types/d3-scale` and `@types/d3-scale-chromatic` to devDependencies
* update all `d3` related dependencies

package.json

@@ -127,5 +127,12 @@
   },
   "nyc": {
     "report-dir": "coverage/cypress"
+  },
+  "pnpm": {
+    "overrides": {
+      "d3-sankey>d3-array": "^3.2.4",
+      "d3-sankey>d3-shape": "^3.2.0",
+      "@types/d3-sankey>@types/d3-shape": "^3.1.3"
+    }
   }
 }

packages/mermaid-example-diagram/package.json

@@ -42,7 +42,7 @@
     "cytoscape": "^3.23.0",
     "cytoscape-cose-bilkent": "^4.1.0",
     "cytoscape-fcose": "^2.1.0",
-    "d3": "^7.0.0",
+    "d3": "^7.8.5",
     "khroma": "^2.0.0",
     "non-layered-tidy-tree-layout": "^2.0.2"
   },

packages/mermaid/package.json

@@ -60,12 +60,10 @@
   },
   "dependencies": {
     "@braintree/sanitize-url": "^6.0.1",
-    "@types/d3-scale": "^4.0.3",
-    "@types/d3-scale-chromatic": "^3.0.0",
     "cytoscape": "^3.23.0",
     "cytoscape-cose-bilkent": "^4.1.0",
     "cytoscape-fcose": "^2.1.0",
-    "d3": "^7.4.0",
+    "d3": "^7.8.5",
     "d3-sankey": "^0.12.3",
     "dagre-d3-es": "7.0.10",
     "dayjs": "^1.11.7",
@@ -83,11 +81,12 @@
   "devDependencies": {
     "@adobe/jsonschema2md": "^7.1.4",
     "@types/cytoscape": "^3.19.9",
-    "@types/d3": "^7.4.0",
-    "@types/d3-sankey": "^0.12.1",
-    "@types/d3-scale": "^4.0.3",
-    "@types/d3-selection": "^3.0.5",
-    "@types/d3-shape": "^3.1.1",
+    "@types/d3": "^7.4.1",
+    "@types/d3-sankey": "^0.12.2",
+    "@types/d3-scale": "^4.0.5",
+    "@types/d3-scale-chromatic": "^3.0.0",
+    "@types/d3-selection": "^3.0.7",
+    "@types/d3-shape": "^3.1.3",
     "@types/dompurify": "^3.0.2",
     "@types/jsdom": "^21.1.1",
     "@types/lodash-es": "^4.17.7",