Added a naming scheme

Added a naming scheme for keriksson

Fixed variance crash

Fixed crash when a fastq of length 1 is among those being analyzed.

Working as python import

Works as python import. Also fixed pesky log file issue.

First working version. Updated README.

Merge pull request #1 from Zymo-Research/readmeAddPaperAndLinebreaks

Add paper link and line breaks to quickstart

Initial Release

Docker appears to be working. Command line appears to be working.