Input Ouput Kernel Regression (IOKR) for Metabolite Identification

This repository provides the code to run different IOKR and Magnitude-preserving IOKR for the metabolite identification problem.

IOKR

Please cite:

@Article{Brouard2016,
  author    = {Brouard, C{\'e}line and Shen, Huibin and D{\"u}hrkop, Kai and d'Alch{\'e}-Buc, Florence and B{\"o}cker, Sebastian and Rousu, Juho},
  title     = {Fast metabolite identification with Input Output Kernel Regression},
  journal   = {Bioinformatics},
  year      = {2016},
  volume    = {32},
  number    = {12},
  pages     = {i28--i36},
  publisher = {Oxford Univ Press},
}

MP-IOKR

Please cite:

@InProceedings{Brouard2017,
  author    = {Céline Brouard and Eric Bach and Sebastian Böcker and Juho Rousu},
  booktitle = {Proceedings of the Ninth Asian Conference on Machine Learning},
  title     = {Magnitude-Preserving Ranking for Structured Outputs},
  year      = {2017},
  editor    = {Min-Ling Zhang and Yung-Kyun Noh},
  month     = {15--17 Nov},
  pages     = {407--422},
  publisher = {PMLR},
  series    = {Proceedings of Machine Learning Research},
  volume    = {77},
  pdf       = {http://proceedings.mlr.press/v77/brouard17a/brouard17a.pdf},
  url       = {http://proceedings.mlr.press/v77/brouard17a.html},
}