Fixed c order Zarr images not opening correctly. Updated Linux version.

abcucberkeley · Dec 16, 2022 · d93cf1e · d93cf1e
1 parent 3ce59b3
commit d93cf1e
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Showing 3 changed files with 2 additions and 1 deletion.
diff --git a/PRZC/libpReadZarrC.so b/PRZC/libpReadZarrC.so
diff --git a/PRZC/parallelReadZarr.c b/PRZC/parallelReadZarr.c
@@ -589,7 +589,8 @@ void* readZarrParallelHelper(const char* folderName, uint64_t startX, uint64_t s
 	void* zarr = malloc(dim[0]*dim[1]*dim[2]*(bits/8));
 	parallelReadZarr(zarr,folderName,startX,startY,startZ,endX,endY,endZ,chunkXSize,chunkYSize,chunkZSize,shapeX,shapeY,shapeZ,bits,order,cname);
 	// May need to add a check for if the data is f order or c order for ImageJ
-	if(imageJIm && (order == 'F' || order == 'f')){
+	// For the c order images I have tested, we also have to do this flip for now
+	if(imageJIm /*&& (order == 'F' || order == 'f')*/){
 		void* zarrC = malloc(dim[0]*dim[1]*dim[2]*(bits/8));
 		#pragma omp parallel for
 		for(uint64_t k = 0; k < dim[2]; k++){

diff --git a/linux/Parallel_Fiji_Visualizer_lib/libpReadZarrC.so b/linux/Parallel_Fiji_Visualizer_lib/libpReadZarrC.so