Code commit prior to fixing documentation.

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "gramm"]
+	path = gramm
+	url = https://github.com/abrandberg/gramm.git

collectAllResults.m

@@ -0,0 +1,111 @@
+function results = collectAllResults(indentationSet)
+
+
+counter = 0;
+for cLoop = 1:numel(indentationSet)
+    counterSave = counter+1;
+
+    for dLoop = numel(indentationSet(cLoop).Er):-1:1
+
+
+        geometricMean = indentationSet(cLoop).diagnostics(dLoop).geometricMeanOfSu;
+        medianOfSu = indentationSet(cLoop).diagnostics(dLoop).medianOfSu;
+
+        if sum(size(geometricMean)) > 0
+            condition1 = inf > abs((geometricMean - medianOfSu)./medianOfSu);
+        else
+             condition1 = 0;
+        end
+
+        C2 =   isreal(indentationSet(cLoop).Er(dLoop)) ...
+             & not(isnan(indentationSet(cLoop).Er(dLoop))) ...
+             & not(isempty(indentationSet(cLoop).Er(dLoop)));
+
+
+        if condition1 && C2
+            counter = counter + 1;
+            results(counter).Er = real(indentationSet(cLoop).Er(dLoop));
+            results(counter).H = indentationSet(cLoop).H(dLoop);
+            results(counter).Cidx = indentationSet(cLoop).Cidx(dLoop);
+            results(counter).thermIdx = indentationSet(cLoop).thermIdx(dLoop);
+            results(counter).inputFiles = indentationSet(cLoop).inputFiles{dLoop};
+
+            results(counter).springConstant = indentationSet(cLoop).springConstant;
+            results(counter).designatedName = indentationSet(cLoop).designatedName;
+            results(counter).relativeHumidity = indentationSet(cLoop).relativeHumidity;
+            results(counter).indenterType = indentationSet(cLoop).indenterType;
+            results(counter).indentationNormal = indentationSet(cLoop).indentationNormal;
+
+            results(counter).maxIndentation = indentationSet(cLoop).diagnostics(dLoop).maxIndentation;
+            results(counter).x0 = indentationSet(cLoop).diagnostics(dLoop).x0;
+            results(counter).h_dot_tot = indentationSet(cLoop).diagnostics(dLoop).h_dot_tot;
+            results(counter).geometricMeanOfSu = indentationSet(cLoop).diagnostics(dLoop).geometricMeanOfSu;
+            results(counter).medianOfSu = indentationSet(cLoop).diagnostics(dLoop).medianOfSu;
+
+            results(counter).hc = indentationSet(cLoop).diagnostics(dLoop).hc;
+
+            results(counter).hf = indentationSet(cLoop).diagnostics(dLoop).hf;
+            results(counter).unloadArea = indentationSet(cLoop).diagnostics(dLoop).unloadArea;
+            results(counter).area_xy = indentationSet(cLoop).diagnostics(dLoop).area_xy;
+
+            results(counter).uld_p = indentationSet(cLoop).diagnostics(dLoop).uld_p;
+            results(counter).xy = indentationSet(cLoop).diagnostics(dLoop).xy;
+
+    %         results(counter).geometricMean = indentationSet(cLoop).diagnostics.geometricMeanOfSu(dLoop);
+            indexPrecursor = strfind(results(counter).inputFiles,'_');
+
+
+            if strfind(results(counter).inputFiles,'MX') > 0
+
+                results(counter).fiberInSet = str2double(results(counter).inputFiles(3));
+                results(counter).indentationInSet = str2double(results(counter).inputFiles(indexPrecursor(2)+1:indexPrecursor(3)-1));
+                results(counter).machineIndex = str2double(strtok(results(counter).inputFiles(indexPrecursor(3)+1:end),'.'));
+
+            else
+            if length(indexPrecursor) > 3
+                indexPrecursor(1:end-3) = [];
+            end
+
+            results(counter).fiberInSet = str2double(results(counter).inputFiles(indexPrecursor(1)+1:indexPrecursor(2)-1));
+            results(counter).indentationInSet = str2double(results(counter).inputFiles(indexPrecursor(2)+1:indexPrecursor(3)-1));
+            results(counter).machineIndex = str2double(strtok(results(counter).inputFiles(indexPrecursor(3)+1:end),'.'));
+
+            end
+
+            if isnan(results(counter).fiberInSet)
+                disp(stop) % debug
+            end
+
+        else
+%             disp('Deleted')
+        end
+
+
+    end
+
+    uniqueFibersInSet = unique([results([counterSave:counter]).fiberInSet]);
+    for fLoop = 1:numel(uniqueFibersInSet)
+        selIdx = [results.fiberInSet] == uniqueFibersInSet(fLoop) & ...
+                 strcmp({results.indenterType},indentationSet(cLoop).indenterType) & ...
+                 [results.relativeHumidity] == indentationSet(cLoop).relativeHumidity & ...
+                 strcmp({results.indentationNormal},indentationSet(cLoop).indentationNormal);
+        for eLoop = counterSave:counter
+            if selIdx(eLoop)
+                results(eLoop).medianOfSet = median([results(selIdx).Er],'omitnan');    % Set here is RH+Fiber+Indenter+Direction
+                results(eLoop).meanOfSet = mean([results(selIdx).Er],'omitnan');    % Set here is RH+Fiber+Indenter+Direction
+                results(eLoop).stdOfSet = std([results(selIdx).Er],'omitnan');    % Set here is RH+Fiber+Indenter+Direction
+
+            end
+        end
+    end   
+end
+
+
+
+
+
+
+
+
+
+