Enhancer_pred_supple

This folder includes supplements codes for "Differential Analysis of Chromatin Accessibility and Histone Modifications for Predicting Mouse Developmental Enhancers, Fu et al.", which is accepted by Nucleic Acid Res.

1. Figure script

Contains scripts to plot main and supplement figures.

2. Uniform pipeline

Contains scripts to perform uniform pipeline(Fig. S1) on different algorithm.

3. Processing code

Contains other scripts to get count, length, consistency, PR-AUC and other metrics.

4. Diff signal predict

Contains a pipeline for differential signal enhancer prediction with H3K27ac ChIP-seq and DNase-seq data.