prototype

DESCRIPTION

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+Package: pamm.xgb
+Title: Advanced survival analysis using xgboost
+Version: 0.1.0
+Date: 2020-01-07
+Authors@R: person("Andreas", "Bender", , "[email protected]", role = c("aut", "cre"), comment=c(ORCID = "0000-0001-5628-8611"))
+Description: Estimate piece-wise exponential models using gradient based algorithms.
+Depends: R (>= 3.6.0)
+Imports:
+    caret,
+    checkmate,
+    rlang,
+    purrr,
+    dplyr,
+    tidyr,
+    pammtools,
+    xgboost,
+    pec,
+    prodlim,
+    Formula,
+    survival
+Suggests:
+    knitr,
+    rmarkdown,
+    testthat
+Remotes:
+  adibender/pammtools
+License: MIT + file LICENSE
+Encoding: UTF-8
+LazyData: true
+RoxygenNote: 7.0.2
+VignetteBuilder: knitr

LICENSE

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+YEAR: 2019
+COPYRIGHT HOLDER: Andreas Bender

LICENSE.md

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+# MIT License
+
+Copyright (c) 2019 Andreas Bender
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+
+S3method(as.data.frame,crps)
+S3method(as_ped,pam_xgb)
+S3method(predict,pam_xgb)
+S3method(predictEventProb,pam_xgb)
+S3method(predictSurvProb,pam_xgb)
+export(add_cumu_hazard2)
+export(add_hazard2)
+export(add_surv_prob2)
+export(as_xgb_data)
+export(get_cv_indices)
+export(get_ibs)
+export(get_split_indices)
+export(random_params)
+export(rf.cv_pam)
+export(rf.tune_pam)
+export(sim_pexp_cr)
+export(xgb.cv_pam)
+export(xgb.train.ped)
+export(xgb.tune_pam)
+export(xgboost.ped)
+import(checkmate)
+import(dplyr)
+importFrom(Formula,Formula)
+importFrom(caret,createFolds)
+importFrom(dplyr,bind_cols)
+importFrom(pammtools,as_ped)
+importFrom(pammtools,get_intervals)
+importFrom(pammtools,is.ped)
+importFrom(pammtools,split_data)
+importFrom(pec,crps)
+importFrom(pec,pec)
+importFrom(pec,predictEventProb)
+importFrom(pec,predictSurvProb)
+importFrom(prodlim,Hist)
+importFrom(purrr,flatten_chr)
+importFrom(purrr,map)
+importFrom(purrr,map_dfr)
+importFrom(purrr,map_lgl)
+importFrom(purrr,reduce)
+importFrom(rlang,.data)
+importFrom(rlang,.env)
+importFrom(rlang,UQ)
+importFrom(rlang,is_atomic)
+importFrom(rlang,quo_name)
+importFrom(rlang,sym)
+importFrom(stats,model.matrix)
+importFrom(stats,predict)
+importFrom(stats,quantile)
+importFrom(survival,Surv)
+importFrom(tidyr,fill)
+importFrom(tidyr,pivot_longer)
+importFrom(xgboost,setinfo)
+importFrom(xgboost,xgb.DMatrix)
+importFrom(xgboost,xgb.train)
+importFrom(xgboost,xgboost)