Releases: adnaniazi/tailfindr
Releases · adnaniazi/tailfindr
tldr-seq_v1.4.0
Tailfindr adapted for the TLDR-seq protocol
tailfindr_v1.4
tailfindr_v1.3
-Added support for SQK-PCS110 cDNA kit
-Made SQK-PCS110 cDNA kit as the default for cDNA
-Fixed rbokeh's empty plots.
tailfindr_v1.2
Fixed a bug that caused the RNA algorithm to fail because the latest Albacore algorithm does not output the start column in the Event table.
tailfindr_v1.1
- Added support for specifying custom primers.
Example code on how to specify custom primers when calling tailfindr:
df <- find_tails(fast5_dir = system.file('extdata', 'cdna', package = 'tailfindr'),
save_dir = '~/Downloads/tailfindr_output',
csv_filename = 'cdna_tails.csv',
num_cores = 4,
dna_datatype = 'custom-cdna',
front_primer = "TTTCTGTTGGTGCTGATATTGCTGCCATTACGGCCGG",
end_primer = "ACTTGCCTGTCGCTCTATCTT")
tailfindr_v1.0
- Estimates polyA tail length in RNA
- Estimates poly(A)/(T) length in cDNA
- Does not all currently allow for specifying custom cDNA primers
- This version was used in the tailfindr paper