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Formatting of lists
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aecker committed May 2, 2014
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Expand Up @@ -43,10 +43,10 @@ Below we provide an overview of the analysis tables used for the current project

In addition to the classes defined in this repository, we use a number of general purpose libraries for the basic organization of our experimental data and tasks such as spike detection and sorting. These libraries can be found on Github as well:

* https://github.com/atlab/sessions -- meta data stored by acquisition system and processing toolchain (database schemas acq, detect, sort)
* https://github.com/atlab/spikedetection -- spike detection
* https://github.com/aecker/moksm -- spike sorting
* https://github.com/aecker/gpfa -- Gaussian Process Factor Analysis (GPFA)
* https://github.com/atlab/sessions -- meta data stored by acquisition system and processing toolchain (database schemas acq, detect, sort)
* https://github.com/atlab/spikedetection -- spike detection
* https://github.com/aecker/moksm -- spike sorting
* https://github.com/aecker/gpfa -- Gaussian Process Factor Analysis (GPFA)



Expand Down Expand Up @@ -117,11 +117,11 @@ Each Matlab package (+xyz) maps to a database schema and each Matlab class to a

This schema contains the metadata entered into the database by the recording software during data collection. The following tables are most relevant:

* `Subjects`: list of monkeys
* `Sessions`: experimental sessions (can contain multiple recordings and stimuli)
* `Ephys`: electrophysiological recording
* `Stimulation`: visual stimulus presentation
* `EphysStimuliationLink`: links simultaneous ephys recordings and stimulus presentations
* `Subjects`: list of monkeys
* `Sessions`: experimental sessions (can contain multiple recordings and stimuli)
* `Ephys`: electrophysiological recording
* `Stimulation`: visual stimulus presentation
* `EphysStimuliationLink`: links simultaneous ephys recordings and stimulus presentations



Expand All @@ -147,10 +147,10 @@ The schema contains general purpose electrophysiology tables. Only `ephys.Spikes

This schema contains my (AE) general purpose electrophysiology tables. The following tables are most relevant:

* `SpikesByTrial`: spike times relative to stimulus onset for each trial
* `SpikeCounts`: spike count in a certain window (see `SpikeCountParams`) for each cell and each trial
* `Lfp`: bandpass-filtered LFP trace (see `LfpParams` for parameters)
* `LfpByTrial`: LFP snippet for each trial aligned to stimulus onset
* `SpikesByTrial`: spike times relative to stimulus onset for each trial
* `SpikeCounts`: spike count in a certain window (see `SpikeCountParams`) for each cell and each trial
* `Lfp`: bandpass-filtered LFP trace (see `LfpParams` for parameters)
* `LfpByTrial`: LFP snippet for each trial aligned to stimulus onset



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