compiling pandas returns error, set to first pandas version having co… #149
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| name: ci-code | |
| on: | |
| push: | |
| branches-ignore: [gh-pages] | |
| pull_request: | |
| branches-ignore: [gh-pages] | |
| paths-ignore: [docs/**] | |
| # https://docs.github.com/en/actions/using-jobs/using-concurrency | |
| concurrency: | |
| # only cancel in-progress jobs or runs for the current workflow - matches against branch & tags | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| FORCE_COLOR: 1 | |
| jobs: | |
| #check-requirements: | |
| # runs-on: ubuntu-latest | |
| # timeout-minutes: 5 | |
| # steps: | |
| # - uses: actions/checkout@v4 | |
| # - name: Set up Python 3.12 | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: '3.12' | |
| # - name: Install utils/ dependencies | |
| # run: pip install -r utils/requirements.txt | |
| # - name: Check requirements files | |
| # id: check_reqs | |
| # run: python ./utils/dependency_management.py check-requirements DEFAULT | |
| # - name: Create commit comment | |
| # if: failure() && steps.check_reqs.outputs.error | |
| # uses: peter-evans/commit-comment@v3 | |
| # with: | |
| # path: pyproject.toml | |
| # body: | | |
| # ${{ steps.check_reqs.outputs.error }} | |
| # Click [here](https://github.com/aiidateam/aiida-core/wiki/AiiDA-Dependency-Management) for more information on dependency management. | |
| tests: | |
| #needs: [check-requirements] | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 45 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.9', '3.12', '3.13'] | |
| services: | |
| postgres: | |
| image: postgres:10 | |
| env: | |
| POSTGRES_DB: test_aiida | |
| POSTGRES_PASSWORD: '' | |
| POSTGRES_HOST_AUTH_METHOD: trust | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| rabbitmq: | |
| image: rabbitmq:3.8.14-management | |
| ports: | |
| - 5672:5672 | |
| - 15672:15672 | |
| slurm: | |
| image: xenonmiddleware/slurm:17 | |
| ports: | |
| - 5001:22 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install system dependencies | |
| run: sudo apt update && sudo apt install postgresql graphviz | |
| - name: Install aiida-core | |
| uses: ./.github/actions/install-aiida-core | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup environment | |
| run: .github/workflows/setup.sh | |
| - name: Run test suite | |
| env: | |
| AIIDA_TEST_PROFILE: test_aiida | |
| AIIDA_WARN_v3: 1 | |
| # Python 3.12 has a performance regression when running with code coverage | |
| # so run code coverage only for python 3.9. | |
| run: pytest -v tests -m 'not nightly' ${{ matrix.python-version == '3.9' && '--cov aiida' || '' }} | |
| - name: Upload coverage report | |
| if: matrix.python-version == 3.9 && github.repository == 'aiidateam/aiida-core' | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| name: aiida-pytests-py3.9 | |
| file: ./coverage.xml | |
| fail_ci_if_error: false # don't fail job, if coverage upload fails | |
| tests-presto: | |
| #needs: [check-requirements] | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 20 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install graphviz | |
| run: sudo apt update && sudo apt install graphviz | |
| - name: Install aiida-core | |
| uses: ./.github/actions/install-aiida-core | |
| with: | |
| python-version: '3.11' | |
| - name: Setup SSH on localhost | |
| run: .github/workflows/setup_ssh.sh | |
| - name: Run test suite | |
| env: | |
| AIIDA_WARN_v3: 0 | |
| run: pytest -m 'presto' | |
| verdi: | |
| #needs: [check-requirements] | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install aiida-core | |
| uses: ./.github/actions/install-aiida-core | |
| with: | |
| python-version: '3.12' | |
| from-requirements: 'false' | |
| - name: Run verdi tests | |
| run: | | |
| verdi devel check-load-time | |
| verdi devel check-undesired-imports | |
| .github/workflows/verdi.sh |