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Single-cell neural activity processing toolkit for calcium imaging recordings of deformable organisms

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ahmeddeladly/Hydra-Neural-Activity-Analysis

 
 

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Hydra-Neural-Activity-Analysis

Single-cell resolution toolkit for calcium imaging recordings of Hydra Vulgaris, should also work for similar deformable organisms.

Pipeline for tracking individual neurons, recording neural activity and processing the resulting signals.

Includes features analysing Hydra behaviour recordings made with DeepLabCut.

:)

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Single-cell neural activity processing toolkit for calcium imaging recordings of deformable organisms

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  • Jupyter Notebook 99.8%
  • Python 0.2%