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Commit 4fc9609

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aegis301aegis301
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update concepts
1 parent cbf584c commit 4fc9609

28 files changed

+172
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‎concepts/Adrenaline_dosage.yml

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@@ -2,7 +2,7 @@ description: ''
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: ''
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mapper:
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- klass: MimicObservationMapper
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params:
@@ -11,7 +11,7 @@ mapper:
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schema: mimiciv_icu
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table: inputevents
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source: mimiciv
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unit: ''
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unit: mg/time
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name: Adrenaline_dosage
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unit: ug/kg/min
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upper_limit: 300
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upper_limit: ''

‎concepts/Age.yml

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Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Patient's age
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
@@ -11,7 +11,7 @@ mapper:
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schema: mimiciv_derived
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table: age
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source: mimiciv
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unit: ''
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unit: years
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name: Age
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unit: years
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upper_limit: 300
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upper_limit: '130'

‎concepts/AirwayPlateauPressure.yml

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Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Airway Plateau Pressure of a patient
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
@@ -11,7 +11,7 @@ mapper:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: mmHg
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name: AirwayPlateauPressure
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unit: mmHg
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upper_limit: 300
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upper_limit: '100'

‎concepts/BodyHeight.yml

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Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Height of a patient's body
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identifiers:
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loinc: 8302-2
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snomed: '1153637007'
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
@@ -11,7 +11,7 @@ mapper:
1111
schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: cm
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name: BodyHeight
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unit: cm
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upper_limit: 300
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upper_limit: '300'

‎concepts/BodyTemperature.yml

+4-4
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Temperature of a patient's body, irrespective of site
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: '20'
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mapper:
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- klass: MimicObservationMapper
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params:
@@ -11,7 +11,7 @@ mapper:
1111
schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: °C
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name: BodyTemperature
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unit: "\xB0C"
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upper_limit: 300
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unit: °C
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upper_limit: '45'

‎concepts/BodyWeight.yml

+3-3
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Weight of a patien's body
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identifiers:
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loinc: 29463-7
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snomed: '27113001'
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
@@ -11,7 +11,7 @@ mapper:
1111
schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: kg
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name: BodyWeight
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unit: kg
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upper_limit: 300
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upper_limit: '500'

‎concepts/BreathingRate.yml

+3-3
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Actual breathing rate of patient
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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1111
schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: 1/min
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name: BreathingRate
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unit: 1/min
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upper_limit: 300
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upper_limit: '100'

‎concepts/Creatinine_absolute_serum.yml

+2-2
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: ''
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
@@ -14,4 +14,4 @@ mapper:
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unit: ''
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name: Creatinine_absolute_serum
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unit: mg/dl
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upper_limit: 300
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upper_limit: '1000000'

‎concepts/DiastolicBloodPressue_Arterial_Invasive.yml

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Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Diastolic arterial pressure of a patient
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identifiers:
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loinc: 76213-8
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snomed: '251073000'
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: mmHg
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name: DiastolicBloodPressue_Arterial_Invasive
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unit: mmHg
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upper_limit: 300
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upper_limit: '200'

‎concepts/DiastolicBloodPressue_Arterial_noninvasive.yml

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Original file line numberDiff line numberDiff line change
@@ -1,8 +1,8 @@
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description: Diastolic venous pressure of a patient
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description: Diastolic arterial pressure of a patient
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identifiers:
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loinc: ''
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snomed: '251074006'
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: mmHg
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name: DiastolicBloodPressue_Arterial_noninvasive
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unit: mmHg
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upper_limit: 300
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upper_limit: '200'

‎concepts/Dobutamine_dosage.yml

+3-3
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: ''
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: ''
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mapper:
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- klass: MimicObservationMapper
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params:
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1111
schema: mimiciv_icu
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table: inputevents
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source: mimiciv
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unit: ''
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unit: mg/time
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name: Dobutamine_dosage
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unit: ug/kg/min
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upper_limit: 300
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upper_limit: ''

‎concepts/FiO2.yml

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Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Inspired oxygen concentration of a patient
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: '%'
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name: FiO2
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unit: 1/1
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upper_limit: 300
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unit: '%'
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upper_limit: '100'

‎concepts/Gender.yml

+2-2
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Patient's gender
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: ''
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mapper:
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- klass: MimicObservationMapper
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params:
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unit: ''
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name: Gender
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unit: ''
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upper_limit: 300
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upper_limit: ''

‎concepts/HeartRate.yml

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@@ -1,18 +1,17 @@
1+
description: heart rate of a patient, source agnostic
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identifiers:
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loinc: 8867-4
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snomed: '364075005'
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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constraints:
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itemid: '220045'
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: bpm
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name: HeartRate
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description: Heart rate is the speed of the heartbeat measured by the number of contractions of the heart per minute (bpm).
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unit: bpm
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upper_limit: 300
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lower_limit: 0
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identifiers:
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snomed: "364075005"
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loinc: "8867-4"
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#schema: FHIRObservation
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mapper:
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- klass: MimicObservationMapper
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source: mimic
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unit: bpm
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params:
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schema: mimiciv_icu
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table: chartevents
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constraints:
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itemid: "220045"
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upper_limit: '300'

‎concepts/MeanBloodPressue_Arterial_Invasive.yml

+3-3
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: Mean arterial pressure of a patient
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identifiers:
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loinc: ''
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snomed: '251075007'
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: mmHg
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name: MeanBloodPressue_Arterial_Invasive
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unit: mmHg
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upper_limit: 300
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upper_limit: '200'

‎concepts/MeanBloodPressue_Arterial_Noninvasive.yml

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Original file line numberDiff line numberDiff line change
@@ -1,8 +1,8 @@
1-
description: Diastolic venous pressure of a patient
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description: Diastolic arterial pressure of a patient
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identifiers:
33
loinc: ''
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snomed: '174255007'
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: mmHg
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name: MeanBloodPressue_Arterial_Noninvasive
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unit: mmHg
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upper_limit: 300
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upper_limit: '200'

‎concepts/Norepinephrine_dosage.yml

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Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@ description: ''
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: ''
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: inputevents
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source: mimiciv
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unit: ''
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unit: mg/time
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name: Norepinephrine_dosage
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unit: ug/kg/min
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upper_limit: 300
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upper_limit: ''

‎concepts/OxygenSaturation_Peripheral.yml

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@@ -2,7 +2,7 @@ description: Oxygen Saturation, irrespective of sample site
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: '%'
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name: OxygenSaturation_Peripheral
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unit: '%'
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upper_limit: 300
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upper_limit: '100'

‎concepts/PEEP.yml

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@@ -2,7 +2,7 @@ description: Positive end-expiratory pressure
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identifiers:
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loinc: ''
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snomed: ''
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: cm H2O
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name: PEEP
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unit: cm H2O
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upper_limit: 300
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upper_limit: '40'

‎concepts/SystolicBloodPressure_Arterial_Invasive.yml

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@@ -2,7 +2,7 @@ description: Systolic arterial pressure of a patient
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identifiers:
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loinc: 76215-3
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snomed: '251071003'
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lower_limit: 0
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lower_limit: '0'
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mapper:
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- klass: MimicObservationMapper
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params:
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schema: mimiciv_icu
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table: chartevents
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source: mimiciv
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unit: ''
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unit: mmHg
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name: SystolicBloodPressure_Arterial_Invasive
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unit: mmHg
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upper_limit: 300
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upper_limit: '300'

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