Support for Python 3.13

[agoscinski]

This is a draft for supporting python 3.13. Need to further debug dependencies

So far circus needs to be updated. Since the HEAD of the master branch seems to have fixed most issues on python 3.13, I wanted to test it and published a 0.19.0 version on test pypi from my fork https://github.com/agoscinski/circus

So far numpy needed an update to at least 1.26.2, versions before limited the python version to 3.12 (I am actually not sure how the requirements.txt got to 2.26.1 from the 1.21 in the pyproject.toml).

pandas does not offer binaries for python 3.13 until most recent version 2.2.3, and compiling it during installation fails.

Current issue, that need a bit investigation. I just did not have more time to look into it

Collecting pillow==10.1.0 (from -r requirements/requirements-py-3.13.txt (line 120))                                                                                   
  Downloading Pillow-10.1.0.tar.gz (50.8 MB)                                                                                                                           
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 50.8/50.8 MB 3.9 MB/s eta 0:00:00                                                                                        
  Installing build dependencies ... done                                                                                                                               
  Getting requirements to build wheel ... error                                                                                                                        
  error: subprocess-exited-with-error                                                                                                                                  
                                                                                                                                                                       
  × Getting requirements to build wheel did not run successfully.                                                                                                      
  │ exit code: 1                                                                                                                                                       
  ╰─> [21 lines of output]                                                                                                                                             
      Traceback (most recent call last):                                                                                                                               
        File "/opt/anaconda3/envs/py313/lib/python3.13/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>                    
          main()                                                                   
          ~~~~^^                                                                                                                                                       
        File "/opt/anaconda3/envs/py313/lib/python3.13/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])                                                                                                        
                                   ~~~~^^^^^^^^^^^^^^^^^^^^^^^^
        File "/opt/anaconda3/envs/py313/lib/python3.13/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
          return hook(config_settings)                                             
        File "/tmp/pip-build-env-rqcalicw/overlay/lib/python3.13/site-packages/setuptools/build_meta.py", line 333, in get_requires_for_build_wheel
          return self._get_build_requires(config_settings, requirements=[])
                 ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/tmp/pip-build-env-rqcalicw/overlay/lib/python3.13/site-packages/setuptools/build_meta.py", line 303, in _get_build_requires
          self.run_setup()                                                         
          ~~~~~~~~~~~~~~^^                                                         
        File "/tmp/pip-build-env-rqcalicw/overlay/lib/python3.13/site-packages/setuptools/build_meta.py", line 319, in run_setup
          exec(code, locals())
          ~~~~^^^^^^^^^^^^^^^^                                                     
        File "<string>", line 30, in <module>         
        File "<string>", line 27, in get_version                                   
      KeyError: '__version__'                                                      
      [end of output]                
   
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error                                                

[codecov]

Codecov Report

Attention: Patch coverage is 66.66667% with 1 line in your changes missing coverage. Please review.

Project coverage is 78.09%. Comparing base (208d6a9) to head (4feb104).

Files with missing lines	Patch %	Lines
src/aiida/tools/dbimporters/baseclasses.py	50.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #6600      +/-   ##
==========================================
- Coverage   78.09%   78.09%   -0.00%     
==========================================
  Files         564      564              
  Lines       42544    42547       +3     
==========================================
+ Hits        33219    33221       +2     
- Misses       9325     9326       +1     

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[agoscinski]

Some tests fail because I still circus from testpypi and I haven't added extra-requires at these places. In the end we want to publish the package so the important test that fails is ci-code for py313 that fails because of

FAILED tests/transports/test_ssh.py::test_proxy_command - paramiko.ssh_exception.SSHException: Error reading SSH protocol bannerfiledescriptor out of range in select()
FAILED tests/transports/test_ssh.py::test_gotocomputer - paramiko.ssh_exception.SSHException: Error reading SSH protocol bannerfiledescriptor out of range in select()

Need to figure this out