Add #13

	name : Integration Tests
	on :
	# allow manual triggering
	workflow_dispatch:

	# for debugging
	push:
	pull_request:

	schedule:
	# run Thursday 4:30 AM UTC
	- cron: '30 4 * * 4'

	env:
	R_LIBS_USER: /usr/local/lib/R/site-library
	LC_ALL: en_US.UTF-8
	NCPUS: 2
	PGHOST: postgres
	CI: true

	jobs:
	test:
	runs-on: ubuntu-latest

	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	strategy:
	fail-fast: false
	matrix:
	R:
	- "4.0"
	- "4.1"

	services:
	postgres:
	image: mdillon/postgis:9.5
	options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5

	container:
	image: pecan/depends:R${{ matrix.R }}

	steps:
	# checkout source code
	- name: work around https://github.com/actions/checkout/issues/766
	run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
	- uses: actions/checkout@v3
	with:
	set-safe-directory: false

	# install additional tools needed
	- name: install utils
	run: apt-get update && apt-get install -y postgresql-client qpdf
	- name: update dependency lists
	run: Rscript scripts/generate_dependencies.R
	- name: check for out-of-date dependencies files
	uses: infotroph/tree-is-clean@v1
	- name: install newly-added dependencies
	run: Rscript docker/depends/pecan.depends.R

	# initialize database
	- name: db setup
	uses: docker://pecan/db:ci
	- name: add models to db
	run: ./scripts/add.models.sh

	- name: Install Packages
	run: make -j1 install

	- name: Run tests
	run: \|
	for FILE in modules/data.atmosphere/inst/integrationTests/*; do
	Rscript $FILE;
	done

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