Add

.github/workflows/integration-test.yml

@@ -12,7 +12,11 @@ on :
   - cron: '30 4 * * 4'
 
 env:
-    R_LIBS_USER: /usr/local/lib/R/site-library
+  R_LIBS_USER: /usr/local/lib/R/site-library
+  LC_ALL: en_US.UTF-8
+  NCPUS: 2
+  PGHOST: postgres
+  CI: true
 
 jobs:
   test:
@@ -21,21 +25,50 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
+    strategy:
+      fail-fast: false
+      matrix:
+        R:
+          - "4.0"
+          - "4.1"
+
+    services:
+      postgres:
+        image: mdillon/postgis:9.5
+        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+
     container: 
-      image: pecan/executor:develop
+      image: pecan/depends:R${{ matrix.R }}
 
     steps:
+    # checkout source code
     - name: work around https://github.com/actions/checkout/issues/766
       run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
     - uses: actions/checkout@v3
       with:
         set-safe-directory: false
 
+    # install additional tools needed
+    - name: install utils
+      run: apt-get update && apt-get install -y postgresql-client qpdf
+    - name: update dependency lists
+      run: Rscript scripts/generate_dependencies.R
+    - name: check for out-of-date dependencies files
+      uses: infotroph/tree-is-clean@v1
+    - name: install newly-added dependencies
+      run: Rscript docker/depends/pecan.depends.R
+
+    # initialize database
+    - name: db setup
+      uses: docker://pecan/db:ci
+    - name: add models to db
+      run: ./scripts/add.models.sh
+
     - name: Install Packages
       run: make -j1 install
 
     - name: Run tests
       run: |
         for FILE in modules/data.atmosphere/inst/integrationTests/*; do
           Rscript $FILE;
-        done
+        done