Merge pull request #1 from amathislab/v1

Release v1

LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2023 A.Mathis Group & M.W.Mathis Lab @ EPFL
+Copyright (c) 2020+ Mathis Group @ EPFL
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

PCR-data-generation/1_generate_start_points.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+
+##### START POINTS are already present in the folder start_points #######
+
+## To generate them again, use the following bash code
+
+echo "Generating start_points"
+
+python3.6 -m pip install joblib
+python3.6 generate_startpoints5.py --monkey_name 'snap'

PCR-data-generation/2_run_dataset_seed.sh

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+#!/bin/bash
+
+########### Bash script to generate synthetic muscle spindle inputs for each trajectory ############
+
+echo "Generating trajectories"
+
+## j is the folder number where the trajectory will be saved
+## i is the character number (From 1 to 20 single-stroke character).
+
+## Each character will generate two folders with the number that is even for horizontal and odd for vertical.
+## E.g. character a (i=1) --> 0 horizontal folder and 1 vertical folder
+
+## All monkey names [snap, butter, lando, han01_05, han11_22, chips]
+
+for j in {9000..9000..1}
+	do
+
+	SEED=$RANDOM
+	for i in {1..20..1}  #20
+
+	  do 
+		 echo "sample $j char $i "
+		 let "val=$i*2"
+		 let "val2=$val-1"
+		 python3.6 generate_data_hor_seed.py --label $i --plane 'horizontal' --monkey_name 'snap' --seed $SEED $val2 $j 
+		 python3.6 generate_data_ver_seed.py --label $i --plane 'vertical' --monkey_name 'snap' --seed $SEED $val $j
+
+	 done
+done

PCR-data-generation/3_run_create_dataset_final_all.sh

@@ -0,0 +1,42 @@
+#!/bin/bash
+
+######### Bash script to generate the pcr dataset of spindle inputs used to train TCNs.  ##########
+
+### Change the init and end folder based on the index used for generating the unprocessed data.
+
+echo "Generating trajectories for snap"
+
+#### SNAP
+python3.6 create_dataset_final_all.py --monkey_name 'snap' --lab_count_per_char 90 \
+                                      --init_folder 100 --end_folder 181
+
+## If necessary for other monkeys
+
+# #### HAN 01_05
+# python3.6 create_dataset_final_all.py --monkey_name 'han01_05' --lab_count_per_char 90 \
+#                                       --init_folder 100 --end_folder 181
+
+# echo "Generating trajectories han11_22"
+
+# #### HAN 11__22
+# python3.6 create_dataset_final_all.py --monkey_name 'han11_22' --lab_count_per_char 90 \
+#                                       --init_folder 100 --end_folder 181
+
+# echo "Generating trajectories chips"
+
+# #### CHIPS
+# python3.6 create_dataset_final_all.py --monkey_name 'chips' --lab_count_per_char 90 \
+#                                       --init_folder 100 --end_folder 181
+
+# echo "Generating trajectories lando"
+
+# #### LANDO
+# python3.6 create_dataset_final_all.py --monkey_name 'lando' --lab_count_per_char 90 \
+#                                       --init_folder 100 --end_folder 181
+
+# echo "Generating trajectories butter"
+
+# #### BUTTER
+# python3.6 create_dataset_final_all.py --monkey_name 'butter' --lab_count_per_char 90 \
+#                                       --init_folder 100 --end_folder 181
+