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amices · Aug 3, 2020 · 93eeb30 · 93eeb30
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: mice
 Type: Package
-Version: 3.10.3
+Version: 3.11.0
 Title: Multivariate Imputation by Chained Equations
 Date: 2020-08-02
 Authors@R: c(person("Stef", "van Buuren", role = c("aut","cre"),

diff --git a/NEWS.md b/NEWS.md
@@ -3,18 +3,18 @@ title: "News"
 output: github_document
 ---
 
-# mice 3.10.3
+# mice 3.11.0
 
-* Updates on `ampute` documentation (#251)
-* Adds missing `Rccp` dependency (#248)
-
-# mice 3.10.2
+## Major changes
 
-* Ask user permission before installing a package from `suggests`.
+* The Cox model does not return `df.residual`, which caused problematic behavior in the `D1()`, `D2()`, `D3()`, `anova()` and `pool()`. `mice` now extracts the relevant information from other parts of the objects returned by `survival::coxph()`, which solves long-standing issues with the integration of the Cox model (#246).
+* Adds missing `Rccp` dependency to work with `tidyr 1.1.1` (#248).
 
-# mice 3.10.1
+## Minor changes
 
-* The Cox model does not return `df.residual`, which causes problematic behavior in the `D1()`, `D2()`, `D3()`, `anova()` and `pool()`. `mice` now extracts the relevant information from other parts of the objects returned by `survival::coxph()`, which solves long-standing issues with the integration of the Cox model (#246).
+* Addresses warnings: `Non-file package-anchored link(s) in documentation object`.
+* Updates on `ampute` documentation (#251).
+* Ask user permission before installing a package from `suggests`.
 
 # mice 3.10.0
 

diff --git a/cran-comments.Rmd b/cran-comments.Rmd
@@ -7,16 +7,19 @@ output: github_document
 knitr::opts_chunk$set(echo = TRUE)
 ```
 
-## mice 3.10
-New submission
+## mice 3.11.00
 
-## Reason 
+New submission. 
+
+## Reasons
+
+1. `tidyr` stopped importing `Rccp`, and because of that `mice` failed to build on CRAN
+2. Various changes and enhancements since `mice 3.10.0`
 
-`mice 3.10.0` adds new functions `tidy.mipo()` and `glance.mipo()`, and solves a problem caused by separating `broom` and `broom.mixed`.
 
 ## Test environments
 
-* local OS X install, 10.15.4, R 4.0.2
+* local OS X install, 10.15.6, R 4.0.2
 * win-builder
 * Rhub
 
@@ -30,7 +33,7 @@ build()
 ```
 
 ```{bash eval=FALSE}
-R CMD CHECK /Users/buurensv/Package/mice/mice_3.10.0.tar.gz
+R CMD CHECK /Users/buurensv/Package/mice/mice_3.11.0.tar.gz
 ```
 
 
@@ -52,22 +55,88 @@ check_rhub()
 ```
 
 ```
-Build ID:	mice_3.10.0.tar.gz-ad5f8a9c8d27d823a9c47247b8a27a39
-Platform:	Debian Linux, R-devel, GCC
-Submitted:	58 minutes 23 seconds ago
-Build time:	57 minutes 56.7 seconds
+Build ID:	mice_3.11.0.tar.gz-2a50957ce854442eb831250603c96457
+Platform:	Debian Linux, R-devel, GCC ASAN/UBSAN
+Submitted:	2 hours 55.4 seconds ago
+Build time:	2 hours 52.2 seconds
 
-Status: succes
+Status: error
 ```
 
+There's a runtime compiler error in `test.check("mice")`, but everything seems to run. I am not able to infer what to cause is, and assume it is not related to `mice`.
+
+```
+Build ID:	mice_3.11.0.tar.gz-0cbfa4e6d65a454692af941423254260
+Platform:	Ubuntu Linux 16.04 LTS, R-release, GCC
+Submitted:	57 minutes 40.7 seconds ago
+Build time:	57 minutes 32.5 seconds
+NOTES:
+* checking CRAN incoming feasibility ... NOTE
+Maintainer: ‘Stef van Buuren <[email protected]>’
+
+Days since last update: 1
+
+Possibly mis-spelled words in DESCRIPTION:
+  Buuren (40:59)
+  FCS (39:73)
+  Groothuis (41:5)
+  Oudshoorn (41:15)
+  unordered (44:18)
+* checking examples ... NOTE
+Examples with CPU or elapsed time > 5s
+             user system elapsed
+D3          4.667  0.006   9.076
+D2          4.349  0.048   7.846
+bwplot.mids 2.755  0.009   5.401
+xyplot.mids 2.513  0.012   5.040
+** found \donttest examples: check also with --run-donttest
+
+Status: success
 ```
-Build ID:	mice_3.10.0.tar.gz-c5935e091347f67ee83d2577042c897d
-Platform:	Debian Linux, R-devel, GCC
-Submitted:	28 minutes 51.1 seconds ago
-Build time:	28 minutes 49 seconds
 
-Status: succes
 ```
+mice 3.11.0: NOTE
+Build ID:	mice_3.11.0.tar.gz-ffac7df971234c789e0f33d7915f0167
+Platform:	Windows Server 2008 R2 SP1, R-devel, 32/64 bit
+Submitted:	11 minutes 39.2 seconds ago
+Build time:	11 minutes 31.6 seconds
+NOTES:
+* checking CRAN incoming feasibility ... NOTE
+Maintainer: 'Stef van Buuren <[email protected]>'
+
+Days since last update: 1
+
+Status: success
+```
+
+```
+mice 3.11.0: NOTE
+Build ID:	mice_3.11.0.tar.gz-28729f5367314214b71e14247d9ba920
+Platform:	Fedora Linux, R-devel, clang, gfortran
+Submitted:	1 hour 22 minutes 29.1 seconds ago
+Build time:	1 hour 10 minutes 18.8 seconds
+
+NOTES:
+* checking CRAN incoming feasibility ... NOTE
+Maintainer: ‘Stef van Buuren <[email protected]>’
+
+Days since last update: 1
+
+Possibly mis-spelled words in DESCRIPTION:
+  Buuren (40:59)
+  FCS (39:73)
+  Groothuis (41:5)
+  Oudshoorn (41:15)
+* checking examples ... NOTE
+Examples with CPU (user + system) or elapsed time > 5s
+             user system elapsed
+D3          4.549  0.005   7.833
+D2          4.038  0.091   6.457
+bwplot.mids 2.594  0.003   5.048
+
+Status: success
+```
+
 
 
 ## Downstream dependencies
@@ -95,55 +164,55 @@ revdep_summary()
 |field    |value                        |
 |:--------|:----------------------------|
 |version  |R version 4.0.2 (2020-06-22) |
-|os       |macOS Catalina 10.15.5       |
+|os       |macOS Catalina 10.15.6       |
 |system   |x86_64, darwin17.0           |
 |ui       |RStudio                      |
 |language |(EN)                         |
 |collate  |en_US.UTF-8                  |
 |ctype    |en_US.UTF-8                  |
 |tz       |Europe/Amsterdam             |
-|date     |2020-07-13                   |
+|date     |2020-08-03                   |
 
 # Dependencies
 
-|package    |old    |new    |Δ  |
-|:----------|:------|:------|:--|
-|mice       |3.9.0  |3.10.0 |*  |
-|assertthat |0.2.1  |0.2.1  |   |
-|backports  |1.1.8  |1.1.8  |   |
-|broom      |0.7.0  |0.7.0  |   |
-|cli        |2.0.2  |2.0.2  |   |
-|crayon     |1.3.4  |1.3.4  |   |
-|digest     |0.6.25 |0.6.25 |   |
-|dplyr      |1.0.0  |1.0.0  |   |
-|ellipsis   |0.3.1  |0.3.1  |   |
-|fansi      |0.4.1  |0.4.1  |   |
-|generics   |0.0.2  |0.0.2  |   |
-|glue       |1.4.1  |1.4.1  |   |
-|lifecycle  |0.2.0  |0.2.0  |   |
-|magrittr   |1.5    |1.5    |   |
-|pillar     |1.4.6  |1.4.6  |   |
-|pkgconfig  |2.0.3  |2.0.3  |   |
-|purrr      |0.3.4  |0.3.4  |   |
-|R6         |2.4.1  |2.4.1  |   |
-|Rcpp       |1.0.5  |1.0.5  |   |
-|rlang      |0.4.7  |0.4.7  |   |
-|stringi    |1.4.6  |1.4.6  |   |
-|stringr    |1.4.0  |1.4.0  |   |
-|tibble     |3.0.3  |3.0.3  |   |
-|tidyr      |1.1.0  |1.1.0  |   |
-|tidyselect |1.1.0  |1.1.0  |   |
-|utf8       |1.1.4  |1.1.4  |   |
-|vctrs      |0.3.1  |0.3.1  |   |
+|package    |old      |new    |Δ  |
+|:----------|:--------|:------|:--|
+|mice       |3.10.0.1 |3.11.0 |*  |
+|assertthat |0.2.1    |0.2.1  |   |
+|backports  |1.1.8    |1.1.8  |   |
+|broom      |0.7.0    |0.7.0  |   |
+|cli        |2.0.2    |2.0.2  |   |
+|cpp11      |0.1.0    |0.1.0  |   |
+|crayon     |1.3.4    |1.3.4  |   |
+|digest     |0.6.25   |0.6.25 |   |
+|dplyr      |1.0.1    |1.0.1  |   |
+|ellipsis   |0.3.1    |0.3.1  |   |
+|fansi      |0.4.1    |0.4.1  |   |
+|generics   |0.0.2    |0.0.2  |   |
+|glue       |1.4.1    |1.4.1  |   |
+|lifecycle  |0.2.0    |0.2.0  |   |
+|magrittr   |1.5      |1.5    |   |
+|pillar     |1.4.6    |1.4.6  |   |
+|pkgconfig  |2.0.3    |2.0.3  |   |
+|purrr      |0.3.4    |0.3.4  |   |
+|R6         |2.4.1    |2.4.1  |   |
+|Rcpp       |1.0.5    |1.0.5  |   |
+|rlang      |0.4.7    |0.4.7  |   |
+|stringi    |1.4.6    |1.4.6  |   |
+|stringr    |1.4.0    |1.4.0  |   |
+|tibble     |3.0.3    |3.0.3  |   |
+|tidyr      |1.1.1    |1.1.1  |   |
+|tidyselect |1.1.0    |1.1.0  |   |
+|utf8       |1.1.4    |1.1.4  |   |
+|vctrs      |0.3.2    |0.3.2  |   |
 
 # Revdeps
 
-## Failed to check (2)
+## Failed to check (1)
 
-|package     |version   |error |warning |note |
-|:-----------|:---------|:-----|:-------|:----|
-|dynr        |0.1.15-25 |1     |        |     |
-|Replication |0.1.2     |1     |        |     |
+|package |version   |error |warning |note |
+|:-------|:---------|:-----|:-------|:----|
+|dynr    |0.1.15-25 |1     |        |     |
 ```
 
-These package require additional software to be installed. See <https://github.com/stefvanbuuren/mice/blob/master/revdep/failures.md> for details.
+This package requires additional software to be installed. See <https://github.com/stefvanbuuren/mice/blob/master/revdep/failures.md> for details.