This repository has been archived by the owner on Jan 20, 2023. It is now read-only.
Releases: andersgs/kraken-trawl
Releases · andersgs/kraken-trawl
Pocket trawler
Not all functionality implemented. But, it is known to work under certain conditions.
Will:
- Take a list of species
- Take a downloaded copy of the assembly_summary file
- Will check for Aspera and Kraken dependencies
- Will produce a Kraken DB as long as all the genomes have a GI number
Known bugs:
- Will not exit nicely if a genome does not have a GI number
- If the user does not nominate a kraken_db name, it will automatically choose None, which will ultimately cause it to fail
Known issues:
- NCBI does not issue GI numbers any longer. Will have to wait for Kraken to find another way of mapping genomes to the taxonomy tree. It is being worked on.
- Documentation still lacks an example.