Pinned Loading

1. AllenNeuralDynamics/segmentation-skeleton-metrics AllenNeuralDynamics/segmentation-skeleton-metrics Public

   A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

   Python 8

2. AllenInstitute/neuron-proofreader AllenInstitute/neuron-proofreader Public

   NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

   Python 6

3. AllenNeuralDynamics/supervoxel-loss AllenNeuralDynamics/supervoxel-loss Public

   Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

   Python 7 3

4. AllenNeuralDynamics/aind-exaspim-soma-detection AllenNeuralDynamics/aind-exaspim-soma-detection Public

   A Python package for detecting somas in ExaSPIM image datasets. Includes tools for image preprocessing and deep learning-based classification and training.

   Jupyter Notebook 3

5. AllenNeuralDynamics/aind-exaspim-image-compression AllenNeuralDynamics/aind-exaspim-image-compression Public

   A Python package for compressing ExaSPIM image datasets via denoising and lossy compression.

   Python 2

6. AllenNeuralDynamics/aind-exaspim-neuron-segmentation AllenNeuralDynamics/aind-exaspim-neuron-segmentation Public

   A Python package for performing neuron segmentation in large-scale image datasets.

   Jupyter Notebook 1