Introduce the environment builder API and implement a micromamba-based build handler#6

Merged

ctrueden merged 121 commits intomainfrom env-builder

Sep 25, 2024

+2,530-135

Commits on Aug 12, 2024

Begin working on the conda environment builder
ctrueden
committed
test commit

carlosuc3m
authored and
ctrueden
committed
add code to be able to download micromamba

carlosuc3m
authored and
ctrueden
committed
add utils to decompress mamba

carlosuc3m
authored and
ctrueden
committed
finalize the methods to unbzip2 and untar

carlosuc3m
authored and
ctrueden
committed
imporve mamba installation

carlosuc3m
authored and
ctrueden
committed
adapt to micromamba

carlosuc3m
authored and
ctrueden
committed
remove not used anymore dep

carlosuc3m
authored and
ctrueden
committed
remove forgotten import

carlosuc3m
authored and
ctrueden
committed
install correctly mamba

carlosuc3m
authored and
ctrueden
committed
correct small errors

carlosuc3m
authored and
ctrueden
committed
adopt mamba syntax

carlosuc3m
authored and
ctrueden
committed
fix paths

carlosuc3m
authored and
ctrueden
committed
add consumer to conda run to keep track of conda env installation

carlosuc3m
authored and
ctrueden
committed
make verbose

carlosuc3m
authored and
ctrueden
committed
send information when creating an env or runnning conda env

carlosuc3m
authored and
ctrueden
committed
send err stream

carlosuc3m
authored and
ctrueden
committed
add permissions to executable and create default Conda builder

carlosuc3m
authored and
ctrueden
committed
update paths

carlosuc3m
authored and
ctrueden
committed
rduce waiting time

carlosuc3m
authored and
ctrueden
committed
reduce the update period

carlosuc3m
authored and
ctrueden
committed
improve log of env installation, more reactive

carlosuc3m
authored and
ctrueden
committed
use just one thread to recover process info

carlosuc3m
authored and
ctrueden
committed
correct line separation

carlosuc3m
authored and
ctrueden
committed
add TODO

carlosuc3m
authored and
ctrueden
committed
start doing method that checks whether a dependency is installed in a

carlosuc3m
authored and
ctrueden
committed
keep adding methods that improve the env management

carlosuc3m
authored and
ctrueden
committed
add todo

carlosuc3m
authored and
ctrueden
committed
improve the robustness of package checking

carlosuc3m
authored and
ctrueden
committed
keep increasing robustness

carlosuc3m
authored and
ctrueden
committed
improve the logic of dependency checking

carlosuc3m
authored and
ctrueden
committed
add method to find whether python is installed and its version is

carlosuc3m
authored and
ctrueden
committed
refactor Conda to Mamba to avoid confusion

carlosuc3m
authored and
ctrueden
committed
add exception

carlosuc3m
authored and
ctrueden
committed
give the possibility of installing or not when instantiating Mamba

carlosuc3m
authored and
ctrueden
committed
reorganize method to make it more understandable

carlosuc3m
authored and
ctrueden
committed
keep increaseing robustness

carlosuc3m
authored and
ctrueden
committed
delete unnecessary method

carlosuc3m
authored and
ctrueden
committed
improve robustness of methods

carlosuc3m
authored and
ctrueden
committed
make methods dynamic

carlosuc3m
authored and
ctrueden
committed
add docs

carlosuc3m
authored and
ctrueden
committed
design consumer scaffold

carlosuc3m
authored and
ctrueden
committed
define the consumers and remove the argument from method

carlosuc3m
authored and
ctrueden
committed
remove now unnecessary methods

carlosuc3m
authored and
ctrueden
committed
add logic to track progress of download

carlosuc3m
authored and
ctrueden
committed
reduce method size and improve micromamba download

carlosuc3m
authored and
ctrueden
committed
add forgotten exception

carlosuc3m
authored and
ctrueden
committed
add -c to run code

carlosuc3m
authored and
ctrueden
committed
allow providing env name or env dir

carlosuc3m
authored and
ctrueden
committed
correct error in logic

carlosuc3m
authored and
ctrueden
committed
cathc every exception

carlosuc3m
authored and
ctrueden
committed
recover methods that i thought were not useful

carlosuc3m
authored and
ctrueden
committed
remove force argument

carlosuc3m
authored and
ctrueden
committed
add automatic yes for everything

carlosuc3m
authored and
ctrueden
committed
do not do the installation at the same time as the instantiation

carlosuc3m
authored and
ctrueden
committed
check the installation works

carlosuc3m
authored and
ctrueden
committed
do not throw exceptions when instantiating mamba

carlosuc3m
authored and
ctrueden
committed
add method to install if it is missing

carlosuc3m
authored and
ctrueden
committed
incorrect logic

carlosuc3m
authored and
ctrueden
committed
remove blocking code

carlosuc3m
authored and
ctrueden
committed
MambaInstallerUtils: inline copy helper method

ctrueden
and
carlosuc3m
committed
Improve javadoc blurbs

ctrueden
and
carlosuc3m
committed
Integrate JDLL's improvements to the Mamba builder

ctrueden
and
carlosuc3m
committed
Don't invoke mamba if no environment was requested
ctrueden
committed
Merge branch 'main' into env-builder
ctrueden
committed
Fix IntelliJ warnings; do minor cleanups
ctrueden
committed

Commits on Aug 14, 2024

Commits on Aug 21, 2024

Commits on Aug 22, 2024

Commits on Aug 30, 2024

Commits on Sep 6, 2024

Commits on Sep 11, 2024

Commits on Sep 20, 2024

Commits on Sep 23, 2024

Commits on Sep 24, 2024

Fix shm test failures on macOS
ctrueden
committed