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Command line utilites automating simple repetitive tasks carried out in data science projects, competitions

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Command Line Utilities

This repository contains the helpful command line utilities that I have written over past years and obtained through open source links. Very simple repetitive tasks that we carry out in all out data handling activities are automated using python and shell scripts. Appending files with different schema/hash sampling of huge files, getting column freq was never more easier.

I find these scripts very helpful in all my corporate projects and kaggle competitions. Would recommend to add these utilites to system path so they can be called from any directory and adds to the ease of doing the tasks.

append_files.py

Description

Concats multiple files with same or different schemas. Files output in order of input arguments.Header sequence output in sequence of header of input files

Usage

python append_files.py [-h] [--ifile IFILE] [--ofile OFILE] [--d D]

Arguments

-h, --help show this help message and exit

--ifile IFILE Input files split by |

--ofile OFILE Output file

--d D Delimiters of input file split by ~. Default: Comma

Example

python append_files.py --ifile 'fileA|fileB|fileC' --ofile outfile.csv --d ',,,'

python append_files.py --ifile 'fileA|fileB|fileC' --ofile outfile.csv --d ','

clean_file.py

Description

Removes non printable characters from the file

Usage

python clean_file.py infile outfile ','

column_freqs.py

Description

Make frequency file for each column present in the input file

Usage

python column_freq.py file1 ','

split_file.py

Description

Splits a huge file into multiple partitions. By default, the split is random. Additionally, specifying key columns ensures that partitions are based on that key columns. All the key-values are output in same partition.

E.g. Customer ID is the jey column => All entries of customer A present in the same partition.

Usage

python split_file.py [-h] [--ifile IFILE] [--ofile OFILE] [--d D][--chunks CHUNKS] [--samplingCols SAMPLINGCOLS]

Arguments

-h, --help show this help message and exit

--ifile IFILE Input file

--ofile OFILE Output file. Default: Input name with suffix.

--d D Delimiter. Default: Comma

--chunks CHUNKS Number of Output Files. Default: 10

--samplingCols SAMPLINGCOLS Sampling Columns separated by |. Default: None

Example

python append_files.py --ifile file1

python append_files.py --ifile file1 --ofile outfile.csv

python append_files.py --ifile file1 --ofile /dir1/dir2/outfile.csv --chunks 10

python append_files.py --ifile file1 --samplingCols 'CUSTID1|CUSTID2' --d '|'

check_col.sh

Description

Count Number of columns in all rows of a file. To be usable for other UNIX Commands, the file should same number of columns in all the rows. In case a cell value also contains delimiter, clean the file using cleantext tool.

Usage

pipe the stream into check_col.sh followed by delimiter

Example

cat filename | check_col.sh ','

cut_by_name.sh

Description

Cut one/multiple columns from unix input stream

Usage

cut_by_name.sh -t delimiter -n 'columns separated by ,'

Example

cat filename | cut_by_name.sh -t "|" -n "COL1,COL2" | histogram.pl

histogram.pl

Description

Get frequency count of an input stream in UNIX pipe operations

Usage

Pipe the stream into histogram.pl

Example

cat filename | cut -d| -f1 | histogram.pl

cat filename | cut_by_name.sh -t ""|"" -n ""COL1,COL2"" | histogram.pl

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Command line utilites automating simple repetitive tasks carried out in data science projects, competitions

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