removed all sample x variant implementations and tests

astheeggeggs · Jul 20, 2023 · 284d71f · 284d71f
1 parent a743130
commit 284d71f
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Showing 10 changed files with 118 additions and 3,155 deletions.
diff --git a/lshmm/api.py b/lshmm/api.py
@@ -3,21 +3,15 @@
 
 import numpy as np
 
-from .forward_backward.fb_diploid_variants_samples import (
-    backward_ls_dip_loop,
-    forward_ls_dip_loop,
-)
-from .forward_backward.fb_haploid_variants_samples import (
-    backwards_ls_hap,
-    forwards_ls_hap,
-)
-from .vit_diploid_variants_samples import (
+from .forward_backward.fb_diploid import backward_ls_dip_loop, forward_ls_dip_loop
+from .forward_backward.fb_haploid import backwards_ls_hap, forwards_ls_hap
+from .vit_diploid import (
     backwards_viterbi_dip,
     forwards_viterbi_dip_low_mem,
     get_phased_path,
     path_ll_dip,
 )
-from .vit_haploid_variants_samples import (
+from .vit_haploid import (
     backwards_viterbi_hap,
     forwards_viterbi_hap_lower_mem_rescaling,
     path_ll_hap,