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Jupyter notebook to accompany tree sequence fundmentals phyloseminar

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Tree-sequence phyloseminar

Wilder Wohns [email protected]

8th April 2020

This jupyter note book accompanies the phyloseminar. Run the notebook locally on linux with the following commands:

git clone [email protected]:awohns/tree-sequence-phyloseminar.git
cd tree-sequence-phyloseminar
python3 -m venv env
source env/bin/activate
pip install wheel  #We do these before the rest as their setups need them
pip install numpy 
pip install -r requirements.txt
jupyter notebook phyloseminar.ipynb

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