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Update README.rst
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bbuchfink authored Jun 16, 2016
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**DIAMOND v0.8.5 by Benjamin Buchfink** - http://github.com/bbuchfink/diamond
**DIAMOND v0.8.6 by Benjamin Buchfink** - http://github.com/bbuchfink/diamond

Published in *Nature Methods* **12**, 59–60 (2015) | `doi:10.1038/nmeth.3176 <http://dx.doi.org/10.1038/nmeth.3176>`_

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=======================
If you use a recent **Linux** operating system, you can download the software in binary format for immediate use::

wget http://github.com/bbuchfink/diamond/releases/download/v0.8.5/diamond-linux64.tar.gz
wget http://github.com/bbuchfink/diamond/releases/download/v0.8.6/diamond-linux64.tar.gz
tar xzf diamond-linux64.tar.gz

Users of **Mac OS X** and **older Linux systems** need to compile the software from source (see `Compiling from source`_). On **FreeBSD**, the software can be installed using ``pkg install diamond``. A binary executable for **Windows** is available under Releases.
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=====================
To compile DIAMOND from source, invoke the following commands on the shell::

$ wget http://github.com/bbuchfink/diamond/archive/v0.8.5.tar.gz
$ tar xzf v0.8.5.tar.gz
$ cd diamond-0.8.5
$ wget http://github.com/bbuchfink/diamond/archive/v0.8.6.tar.gz
$ tar xzf v0.8.6.tar.gz
$ cd diamond-0.8.6
$ mkdir bin
$ cd bin
$ cmake ..
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- Use cmake -DCMAKE_INSTALL_PREFIX=... to install to a different prefix.
- Use cmake -DBUILD_STATIC=ON to create a statically linked executable.

Installing using Homebrew/Linuxbrew
===================================

$ brew install homebrew/science/diamond

Scoring matrices
================
======== ============================================
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