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DIAMOND v0.9.17

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@bbuchfink bbuchfink released this 01 Feb 19:07
· 1418 commits to master since this release
  • Added option --range-culling to restrict hit culling to overlapping query ranges. This feature is designed for long query DNA sequences that may span several genes. In these cases, the default of reporting the 25 best overall hits could cause hits to a lower scoring gene to be overshadowed. But just increasing the number of alignments reported will bloat the output size and reduce performance.
    Using this feature along with -k 25 (default), a hit will only be deleted if at least 50% of its query range is spanned by at least 25 higher or equal scoring hits.
    Using this feature along with --top 10, a hit will only be deleted if its score is more than 10% lower than that of a higher scoring hit over at least 50% of its query range.
    The percentage is configurable using --range-cover. Note that this feature is currently only available in frameshift alignment mode.
  • Fixed a compiler error on FreeBSD.
  • Fixed escape sequences in XML output.