naturalgwas is an R package for simulating phenotypes and evaluating GWAS methods in studies where geographic coverage is large and the studied populations exhibit high levels of population genetic structure (natural GWAS). This package contains the simulation scripts used by Francois and Caye (2017) for comparing latent factor models to oracle methods in this context.
Install the latest version from github (requires devtools):
# install.packages("devtools")
devtools::install_github("bcm-uga/naturalgwas")- Olivier Francois and Kevin Caye. To be filled.