Merge pull request #83 from jlucarga/restore-changes #63
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| name: Test Jupyter Notebooks | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - '**.ipynb' | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: us-central1-docker.pkg.dev/ucb-datahub-2018/user-images/data100-user-image:4497642d | |
| options: --user root | |
| credentials: | |
| username: _json_key | |
| password: ${{ secrets.GCP_SERVICE_ACCOUNT_KEY }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| #- name: Get changed notebooks | |
| # id: changed-notebooks | |
| # uses: tj-actions/changed-files@v44 | |
| # with: | |
| # since_last_remote_commit: true | |
| # files: | | |
| # **.ipynb | |
| - name: Set WORKSPACE_DIR | |
| id: set-variables | |
| run: | | |
| echo GITHUB_WORKSPACE: $GITHUB_WORKSPACE | |
| ls -a ${GITHUB_WORKSPACE} | |
| REPO_FULL_NAME="${{ github.repository }}" | |
| echo REPO_FULL_NAME="${REPO_FULL_NAME}" | |
| REPO_NAME="${REPO_FULL_NAME#*/}" | |
| echo REPO_NAME="${REPO_NAME}" | |
| WORKSPACE_DIR="/__w/${REPO_NAME}/${REPO_NAME}" | |
| echo "WORKSPACE_DIR=${WORKSPACE_DIR}" >> $GITHUB_ENV | |
| ls -a ${WORKSPACE_DIR} | |
| - name: Add debugging | |
| run: | | |
| echo "pwd: " `pwd` | |
| echo ============================ | |
| echo "ls -a" | |
| ls -a | |
| echo ============================ | |
| echo "ls -a ${WORKSPACE_DIR}" | |
| ls -a ${WORKSPACE_DIR} | |
| echo ============================ | |
| - name: Execute notebooks | |
| shell: bash | |
| run: | | |
| ls -a | |
| for file in test_notebooks/* ; do | |
| echo "Converting: '${file}'" | |
| if [ ! -f "${file}" ]; then continue ; fi | |
| jupyter nbconvert --to notebook --execute --inplace "$file" || echo FAILED: "${file}" | |
| done | |
| - name: Check for errors | |
| shell: bash | |
| run: | | |
| cd $WORKSPACE_DIR | |
| for file in test_notebooks/* ; do | |
| if [ ! -f "${file}" ]; then continue ; fi | |
| if grep -q "Execution failed" "$file"; then | |
| echo "Notebook execution failed: $file" | |
| #exit 1 | |
| fi | |
| done | |
| - name: Get changed files | |
| id: changed-files-git | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| ls -a | |
| git status || true | |
| CHANGED_NOTEBOOKS=$(git diff --name-only HEAD^ || true) | |
| echo "changed_files=${CHANGED_NOTEBOOKS}" >> $GITHUB_OUTPUT |