Execute Jupyter Notebooks With Changes #6
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| name: Execute Jupyter Notebooks With Changes | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - '**.ipynb' | |
| pull_request: | |
| branches: | |
| - main | |
| paths: | |
| - '**.ipynb' | |
| jobs: | |
| test-changed-notebooks: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: us-central4-docker.pkg.dev/ucb-datahub-2018/user-images/data100-user-image:ab048e5 | |
| options: --user root | |
| credentials: | |
| username: _json_key | |
| password: ${{ secrets.GCP_SERVICE_ACCOUNT_KEY }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Get changed files | |
| id: changed-files-git | |
| run: | | |
| cd ${GITHUB_WORKSPACE} | |
| ls -a | |
| chown -R root . | |
| git status || true | |
| # Captures changed Jupyter notebooks between the last commit and the previous one | |
| CHANGED_NOTEBOOKS=$(git diff --name-only HEAD^ || true) | |
| echo "changed_files=${CHANGED_NOTEBOOKS}" >> $GITHUB_OUTPUT | |
| - name: Execute changed notebooks | |
| if: steps.changed-files-git.outputs.changed_files | |
| run: | | |
| echo "Changed Notebooks: ${CHANGED_NOTEBOOKS}" | |
| for file in $CHANGED_NOTEBOOKS; do | |
| if [[ $file == *.ipynb ]]; then | |
| echo "Executing notebook: $file" | |
| jupyter nbconvert --to notebook --execute --inplace "$file" || echo "FAILED: ${file}" | |
| fi | |
| done | |
| - name: Check for errors | |
| run: | | |
| for file in $CHANGED_NOTEBOOKS; do | |
| if [[ $file == *.ipynb && -f "$file" ]]; then | |
| if grep -q "Execution failed" "$file"; then | |
| echo "Notebook execution failed: $file" | |
| exit 1 | |
| fi | |
| fi | |
| done |