New script called refactor_testing_query_courseid.py #10
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name: Execute Jupyter Notebooks With Changes | |
on: | |
workflow_dispatch: | |
pull_request: | |
branches: | |
- main | |
paths: | |
- '**.ipynb' | |
jobs: | |
test-changed-notebooks: | |
runs-on: ubuntu-latest | |
container: | |
image: us-central1-docker.pkg.dev/ucb-datahub-2018/user-images/data100-user-image@sha256:a5ac1fd44d1a978b5d19c07996db87fd3e7e3291644c5d448d0d68450763a4db | |
options: --user root | |
credentials: | |
username: _json_key | |
password: ${{ secrets.GCP_SERVICE_ACCOUNT_KEY }} | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Get changed files | |
id: changed-files-git | |
run: | | |
cd ${GITHUB_WORKSPACE} | |
ls -a | |
chown -R root . | |
git status || true | |
# Captures changed Jupyter notebooks between the last commit and the previous one | |
CHANGED_NOTEBOOKS=$(git diff --name-only HEAD^ || true) | |
echo "changed_files=${CHANGED_NOTEBOOKS}" >> $GITHUB_OUTPUT | |
- name: Execute changed notebooks | |
if: steps.changed-files-git.outputs.changed_files | |
run: | | |
echo "Changed Notebooks: ${CHANGED_NOTEBOOKS}" | |
for file in $CHANGED_NOTEBOOKS; do | |
if [[ $file == *.ipynb ]]; then | |
echo "Executing notebook: $file" | |
jupyter nbconvert --to notebook --execute --inplace "$file" || echo "FAILED: ${file}" | |
fi | |
done | |
- name: Check for errors | |
run: | | |
for file in $CHANGED_NOTEBOOKS; do | |
if [[ $file == *.ipynb && -f "$file" ]]; then | |
if grep -q "Execution failed" "$file"; then | |
echo "Notebook execution failed: $file" | |
exit 1 | |
fi | |
fi | |
done |