Merge pull request #133 from fabianegli/use-pytest

use standard pytest file naming convention
bigbio · Jul 29, 2022 · 1e663d1 · 1e663d1
2 parents f9c7eae + ed5dba9
commit 1e663d1
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/.github/workflows/pythonapp.yml b/.github/workflows/pythonapp.yml
@@ -35,7 +35,7 @@ jobs:
       run: |
         python setup.py install
         pip install pytest
-        python sdrf_pipelines/tests/sdrfchecker_tests.py
+        python sdrf_pipelines/tests/test_sdrfchecker.py
     - name: Test OpenMS converter
       run: |
         cd sdrf_pipelines

diff --git a/.github/workflows/pythonpackage.yml b/.github/workflows/pythonpackage.yml
@@ -38,7 +38,7 @@ jobs:
       run: |
         pip install pytest
         python setup.py install
-        python sdrf_pipelines/tests/sdrfchecker_tests.py
+        python sdrf_pipelines/tests/test_sdrfchecker.py
     - name: Test OpenMS converter
       run: |
         cd sdrf_pipelines

diff --git a/sdrf_pipelines/tests/sdrfchecker_tests.py → sdrf_pipelines/tests/test_sdrfchecker.py b/sdrf_pipelines/tests/sdrfchecker_tests.py → sdrf_pipelines/tests/test_sdrfchecker.py
@@ -34,9 +34,9 @@ def test_bioontologies():
     print(ols_terms)
 
     ols_client = SlimOlsClient()
-    for a in ols_terms:
-        terms = ols_client.get_term_from_url(a["ols_url"], ontology="ncbitaxon")
-        [print(x) for x in terms]
+    for ols_term in ols_terms:
+        terms = ols_client.get_term_from_url(ols_term["ols_url"], ontology="ncbitaxon")
+        print(*terms, sep="\n")
 
     keyword = "Lung adenocarcinoma"
     client = Zooma()