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Command line and QIIME2 -- refactoring #16

Merged
merged 24 commits into from
Aug 28, 2019
Merged

Command line and QIIME2 -- refactoring #16

merged 24 commits into from
Aug 28, 2019

Commits on Jun 14, 2019

  1. update feactorization nomenclature

    @cameronmartino
    cameronmartino committed Jun 14, 2019
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  2. fix pep

    @cameronmartino
    cameronmartino committed Jun 14, 2019
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Commits on Jul 23, 2019

  1. update all

    Cameron Martino authored and Cameron Martino committed Jul 23, 2019
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Commits on Aug 20, 2019

  1. fix log-ratio docstring

    @cameronmartino
    cameronmartino committed Aug 20, 2019
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  2. remove x in tensorx to tensor

    @cameronmartino
    cameronmartino committed Aug 20, 2019
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  3. remove random comment

    @cameronmartino
    cameronmartino committed Aug 20, 2019
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  4. meaned vs. sum doc string fix

    @cameronmartino
    cameronmartino committed Aug 20, 2019
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  5. n_comp -> comp_columns

    @cameronmartino
    cameronmartino committed Aug 20, 2019
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  6. fix if statement check for floats

    @cameronmartino
    cameronmartino committed Aug 20, 2019
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Commits on Aug 27, 2019

  1. fix assertIsInstance test

    @cameronmartino
    cameronmartino committed Aug 27, 2019
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  2. two different context managers in test

    @cameronmartino
    cameronmartino committed Aug 27, 2019
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  3. remove un-used partially untested log-ratio code

    @cameronmartino
    cameronmartino committed Aug 27, 2019
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  4. fix random init and value-error

    @cameronmartino
    cameronmartino committed Aug 27, 2019
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  5. fix expected after new random init

    @cameronmartino
    cameronmartino committed Aug 27, 2019
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  6. remove recpie breaking command

    @cameronmartino
    cameronmartino committed Aug 27, 2019
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  7. update README

    @cameronmartino
    cameronmartino committed Aug 27, 2019
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Commits on Aug 28, 2019

  1. add tutorial data and docs

    @cameronmartino
    cameronmartino committed Aug 28, 2019
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  2. update exp. files

    @cameronmartino
    cameronmartino committed Aug 28, 2019
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  3. update readme for new code

    @cameronmartino
    cameronmartino committed Aug 28, 2019
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  4. update default iter

    @cameronmartino
    cameronmartino committed Aug 28, 2019
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  5. minor fixes in the output -- easier to follow for visuals in q2

    @cameronmartino
    cameronmartino committed Aug 28, 2019
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  6. update eig sort

    @cameronmartino
    cameronmartino committed Aug 28, 2019
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  7. final touchup

    @cameronmartino
    cameronmartino committed Aug 28, 2019
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  8. ver bump

    @cameronmartino
    cameronmartino committed Aug 28, 2019
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