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Pytorch refactor #168

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Pytorch refactor #168

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Commits on Apr 12, 2022

  1. DRAFT: first draft of model

    @Keegan-Evans
    Keegan-Evans committed Apr 12, 2022
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Commits on Apr 15, 2022

  1. REFACTOR: beginning of refactor 

    archived old code, new files, basic model rough-in
    @Keegan-Evans
    Keegan-Evans committed Apr 15, 2022
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Commits on Apr 18, 2022

  1. FEAT: forward likelihood now sum(lu, lv, ly)

    @Keegan-Evans
    Keegan-Evans committed Apr 18, 2022
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Commits on Apr 19, 2022

  1. DEBUG: first pass package refactoring

    @Keegan-Evans
    Keegan-Evans committed Apr 19, 2022
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Commits on Apr 27, 2022

  1. IMP: split ILR and ALR, ALR done to ranks

    @Keegan-Evans
    Keegan-Evans committed Apr 27, 2022
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  2. IMP: ALR outputs working

    @Keegan-Evans
    Keegan-Evans committed Apr 27, 2022
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Commits on Apr 29, 2022

  1. FEAT: function for ordination created 

    /getting ready to refactor model init and data
    @Keegan-Evans
    Keegan-Evans committed Apr 29, 2022
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Commits on Apr 30, 2022

  1. FEAT: Produces OrdinationResults

    @Keegan-Evans
    Keegan-Evans committed Apr 30, 2022
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Commits on May 2, 2022

  1. IMP: cleanup before working on tests.

    @Keegan-Evans
    Keegan-Evans committed May 2, 2022
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Commits on May 3, 2022

  1. TEST: test_multimodal runs but fails.

    @Keegan-Evans
    Keegan-Evans committed May 3, 2022
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Commits on May 5, 2022

  1. checkpoint before cleanup for pr

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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  2. IMP: cleanup refactor examples directory

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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  3. IMP: remove sneaky notebook checkpoints

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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  4. IMP: restore original mmvec/multimodal.py

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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  5. IMP: restore q2 goodies

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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  6. IMP: q2 goodies

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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  7. IMP: add min pytorch version

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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  8. DEBUG: conda-> pip pytorch install name

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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  9. IMP: name tweaks

    @Keegan-Evans
    Keegan-Evans committed May 5, 2022
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Commits on May 6, 2022

  1. IMP: var renaming and observation based epochs

    @Keegan-Evans
    Keegan-Evans committed May 6, 2022
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Commits on May 19, 2022

  1. FEAT: plugin-standup

    @Keegan-Evans
    Keegan-Evans committed May 19, 2022
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  2. Merge branch 'pytorch-refactor' of github.com:Keegan-Evans/mmvec into… 

    … pytorch-refactor
    @Keegan-Evans
    Keegan-Evans committed May 19, 2022
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  3. BUG: getting test interface to work after plugin

    @Keegan-Evans
    Keegan-Evans committed May 19, 2022
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Commits on May 25, 2022

  1. IMP: q2 paired-omics method wired up

    @Keegan-Evans
    Keegan-Evans committed May 25, 2022
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  2. BUG: fixing index filtering on biom-tables

    @Keegan-Evans
    Keegan-Evans committed May 25, 2022
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  3. BUG: index dfs based on intersection of indexes

    @Keegan-Evans
    Keegan-Evans committed May 25, 2022
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Commits on Jun 1, 2022

  1. BUG: paired-omics working now.

    @Keegan-Evans
    Keegan-Evans committed Jun 1, 2022
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Commits on Jun 3, 2022

  1. TEST: adding tests for ranks_bare

    @Keegan-Evans
    Keegan-Evans committed Jun 3, 2022
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