Issues

• Most SV types missing from genotyped vcf

  bioinform/metasv#139 · Filter by author afurches opened on Dec 6, 2024

• IOError: [Errno 9] Bad file descriptor

  bioinform/metasv#138 · Filter by author JiaB-He opened on Nov 18, 2022

• ValueError: dictionary update sequence element #0 has length 1; 2 is required

  bioinform/metasv#137 · Filter by author gsilvaarias opened on Feb 16, 2022

• KeyError: 'Assuming'

  bioinform/metasv#136 · Filter by author Qijie0615 opened on Jan 25, 2022

• region overlapped between duplication and deletion

  bioinform/metasv#135 · Filter by author weikai-320722 opened on Dec 19, 2021

• some problems about assembly using parameter --spades

  bioinform/metasv#133 · Filter by author hzjsxu opened on May 20, 2020

• Pip installation error

  bioinform/metasv#132 · Filter by author moldach opened on Mar 11, 2020
  3

• output vcf information

  bioinform/metasv#131 · Filter by author weikai320722 opened on Dec 4, 2019

• output files filtering

  bioinform/metasv#129 · Filter by author weikai320722 opened on Oct 17, 2019
  2

• filter_gaps

  bioinform/metasv#128 · Filter by author Pastellem opened on Jun 6, 2019
  1

• Error: reference file is not indexed

  bioinform/metasv#127 · Filter by author fabfabBesnard opened on Oct 18, 2018

• type 'exceptions.IOError': Broken pipe

  bioinform/metasv#126 · Filter by author songtaogui opened on Jul 9, 2018
  2

• IOError: [Errno 2] No such file or directory: 'cnvnator.call'

  bioinform/metasv#125 · Filter by author colinhercus opened on Feb 1, 2018
  3

• Memory error when using metasv

  bug
  bioinform/metasv#124 · Filter by author saixian248 opened on Oct 17, 2017
  9

  

• Error while reading AGE output

  bioinform/metasv#123 · Filter by author jasjitbanwait opened on Oct 2, 2017
  3

• Merged calls (without assembly) have only homozygous ALT genotype and inheritance analysis.

  bioinform/metasv#122 · Filter by author npatel22526 opened on Aug 17, 2017

• Questions on genotyping

  bioinform/metasv#121 · Filter by author ldorozco opened on Jul 21, 2017

• Run could not finish for DUP variant with option "--svs_to_assemble --svs_to_softclip" on

  bioinform/metasv#118 · Filter by author justin-mbca opened on Feb 16, 2017

• Deletion assembly and soft clip

  bioinform/metasv#117 · Filter by author Madelinehazel opened on Jan 17, 2017
  15

• Lumpy translocations ignored by metaSV

  bioinform/metasv#115 · Filter by author Madelinehazel opened on Oct 28, 2016
  5

• Insertion detection

  bioinform/metasv#111 · Filter by author Madelinehazel opened on Jun 24, 2016
  3

• How to include SV calls from Delly

  bioinform/metasv#110 · Filter by author MMesbahU opened on May 19, 2016
  9

• Permissions errors during run_spades_single in run_spades.py

  bug
  bioinform/metasv#108 · Filter by author aktilot opened on Apr 7, 2016
  5

  

• Object has no attribute 'length' in the last step, Output final VCF file

  bioinform/metasv#105 · Filter by author WJaratlerdsiri-Lab opened on Feb 28, 2016
  9

• OSError: [Errno 12] Cannot allocate memory

  bioinform/metasv#103 · Filter by author Madelinehazel opened on Feb 23, 2016
  6